miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19256 5' -63.1 NC_004684.1 + 13934 0.66 0.359653
Target:  5'- cCGuuGCCGGUGCugacacUCGCGggggGCCcUCg- -3'
miRNA:   3'- -GCggCGGCCACG------AGCGCa---CGGuGGau -5'
19256 5' -63.1 NC_004684.1 + 38101 0.69 0.217805
Target:  5'- cCGCCGUCGGaGUUCGCgGUGCCggagcaaguggagGCCg- -3'
miRNA:   3'- -GCGGCGGCCaCGAGCG-CACGG-------------UGGau -5'
19256 5' -63.1 NC_004684.1 + 9852 0.76 0.078631
Target:  5'- cCGCCGCCGGUGa--GC-UGCCGCCg- -3'
miRNA:   3'- -GCGGCGGCCACgagCGcACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 9548 0.67 0.327675
Target:  5'- gCGCCgguuggaGCCGGUGCgcCGCGaacacgugGCCgACCUGa -3'
miRNA:   3'- -GCGG-------CGGCCACGa-GCGCa-------CGG-UGGAU- -5'
19256 5' -63.1 NC_004684.1 + 63850 0.71 0.160997
Target:  5'- aCGCUGUCGGUGCcacgugCGCGgugGCgGCCUu -3'
miRNA:   3'- -GCGGCGGCCACGa-----GCGCa--CGgUGGAu -5'
19256 5' -63.1 NC_004684.1 + 59403 0.71 0.160997
Target:  5'- uCGCUGCacuugcaGGUGUUgCGCacGUGCCGCCUGg -3'
miRNA:   3'- -GCGGCGg------CCACGA-GCG--CACGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 30176 0.69 0.218348
Target:  5'- aCGCCGUCGGcggcgaGCUgGUG-GCCACCa- -3'
miRNA:   3'- -GCGGCGGCCa-----CGAgCGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 8957 0.69 0.223844
Target:  5'- uGCCGCCGGUggagauGCUgUGCGaGCCAUCa- -3'
miRNA:   3'- gCGGCGGCCA------CGA-GCGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 12839 0.69 0.229457
Target:  5'- uGCUGCCGacGUGgUCGCGgaggccgagGCCGCCa- -3'
miRNA:   3'- gCGGCGGC--CACgAGCGCa--------CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 58164 0.67 0.313585
Target:  5'- gGgaGCCGGUGCgacUGUGCCGCCa- -3'
miRNA:   3'- gCggCGGCCACGagcGCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 26436 0.67 0.320943
Target:  5'- uCGCCGCCGGUgGCcCG-GUGUacggcggcaCGCCUGg -3'
miRNA:   3'- -GCGGCGGCCA-CGaGCgCACG---------GUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 53535 0.67 0.306356
Target:  5'- uGUCGUCGGUGCg-GCGUGCCu---- -3'
miRNA:   3'- gCGGCGGCCACGagCGCACGGuggau -5'
19256 5' -63.1 NC_004684.1 + 7708 0.67 0.299255
Target:  5'- cCGUCGCCGuGgcgcugGC-CGUGaGCCACCUGa -3'
miRNA:   3'- -GCGGCGGC-Ca-----CGaGCGCaCGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 12070 0.67 0.292282
Target:  5'- gGCCGCCgagcgcgacgaGGUGCUggcccgCGCGgcgGCCAUCa- -3'
miRNA:   3'- gCGGCGG-----------CCACGA------GCGCa--CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 65772 0.68 0.285437
Target:  5'- cCGCgCGCCGGUGggCGCGcgcacgGCgACCg- -3'
miRNA:   3'- -GCG-GCGGCCACgaGCGCa-----CGgUGGau -5'
19256 5' -63.1 NC_004684.1 + 11154 0.68 0.285437
Target:  5'- gCGCCGUCGGUGgaCcUG-GCCGCCa- -3'
miRNA:   3'- -GCGGCGGCCACgaGcGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 28571 0.68 0.285437
Target:  5'- cCGCCaCCGGUGUgcgGCG-GCUGCCUGc -3'
miRNA:   3'- -GCGGcGGCCACGag-CGCaCGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 23212 0.66 0.381872
Target:  5'- gGCCGCCGGUGgcgacggcggguucCUgaaauggcucCGCGacGCCACCa- -3'
miRNA:   3'- gCGGCGGCCAC--------------GA----------GCGCa-CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 62736 0.66 0.384397
Target:  5'- uCGUCGUgGGUGCUgGgaCGUGCCAUg-- -3'
miRNA:   3'- -GCGGCGgCCACGAgC--GCACGGUGgau -5'
19256 5' -63.1 NC_004684.1 + 10136 0.69 0.229457
Target:  5'- aCGCCGCUGaccucGUGCUCaGCcaGCCGCCg- -3'
miRNA:   3'- -GCGGCGGC-----CACGAG-CGcaCGGUGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.