miRNA display CGI


Results 61 - 80 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19256 5' -63.1 NC_004684.1 + 12883 0.72 0.134161
Target:  5'- cCGCCGCCGGggaGCcUGCGcucGCCGCCa- -3'
miRNA:   3'- -GCGGCGGCCa--CGaGCGCa--CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 28571 0.68 0.285437
Target:  5'- cCGCCaCCGGUGUgcgGCG-GCUGCCUGc -3'
miRNA:   3'- -GCGGcGGCCACGag-CGCaCGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 12070 0.67 0.292282
Target:  5'- gGCCGCCgagcgcgacgaGGUGCUggcccgCGCGgcgGCCAUCa- -3'
miRNA:   3'- gCGGCGG-----------CCACGA------GCGCa--CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 7708 0.67 0.299255
Target:  5'- cCGUCGCCGuGgcgcugGC-CGUGaGCCACCUGa -3'
miRNA:   3'- -GCGGCGGC-Ca-----CGaGCGCaCGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 49061 0.66 0.375194
Target:  5'- gGCUcgGCCaGGUGCUCGUcgcccacGUcGCCGCCa- -3'
miRNA:   3'- gCGG--CGG-CCACGAGCG-------CA-CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 18328 0.66 0.367776
Target:  5'- cCGCaCGCCGGUGC-CGCccccggaGCCgACCg- -3'
miRNA:   3'- -GCG-GCGGCCACGaGCGca-----CGG-UGGau -5'
19256 5' -63.1 NC_004684.1 + 65432 0.66 0.367776
Target:  5'- gCGCugCGCUGGcgUGCggCGCGcgGCCACCg- -3'
miRNA:   3'- -GCG--GCGGCC--ACGa-GCGCa-CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 22007 0.66 0.359653
Target:  5'- gGCCaugggGCCGGUGCUCGC---CgACCUGa -3'
miRNA:   3'- gCGG-----CGGCCACGAGCGcacGgUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 8132 0.66 0.358044
Target:  5'- aCGaCCGCguCGGUGCUCGgGUGCagcagaucgucaACCa- -3'
miRNA:   3'- -GC-GGCG--GCCACGAGCgCACGg-----------UGGau -5'
19256 5' -63.1 NC_004684.1 + 2449 0.66 0.351656
Target:  5'- uCGcCCGCCuGGgcggccaGCUCgGCGUGCCguaccACCUGa -3'
miRNA:   3'- -GC-GGCGG-CCa------CGAG-CGCACGG-----UGGAU- -5'
19256 5' -63.1 NC_004684.1 + 25439 0.66 0.351656
Target:  5'- uGCCGCUGGccugucggacUGCUcCG-GUGCCAUCa- -3'
miRNA:   3'- gCGGCGGCC----------ACGA-GCgCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 2352 0.66 0.351656
Target:  5'- uGCCGCCcugaGUUCGUG-GCCGCCa- -3'
miRNA:   3'- gCGGCGGcca-CGAGCGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 23573 0.66 0.343786
Target:  5'- aGCCuGCCGG-GCcgCGCGaacaccGCCGCCg- -3'
miRNA:   3'- gCGG-CGGCCaCGa-GCGCa-----CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 21245 0.66 0.343786
Target:  5'- gGCCGCgaGGUGUUCGUGcGCCAg--- -3'
miRNA:   3'- gCGGCGg-CCACGAGCGCaCGGUggau -5'
19256 5' -63.1 NC_004684.1 + 37100 0.67 0.336812
Target:  5'- uGCUGCggagaacguugaggaGG-GCUgGCGUGCCGCCa- -3'
miRNA:   3'- gCGGCGg--------------CCaCGAgCGCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 64803 0.67 0.328429
Target:  5'- aCGCCGuuGGUGCugucgaguUCGUGgGCCAUg-- -3'
miRNA:   3'- -GCGGCggCCACG--------AGCGCaCGGUGgau -5'
19256 5' -63.1 NC_004684.1 + 26436 0.67 0.320943
Target:  5'- uCGCCGCCGGUgGCcCG-GUGUacggcggcaCGCCUGg -3'
miRNA:   3'- -GCGGCGGCCA-CGaGCgCACG---------GUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 58164 0.67 0.313585
Target:  5'- gGgaGCCGGUGCgacUGUGCCGCCa- -3'
miRNA:   3'- gCggCGGCCACGagcGCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 56806 0.67 0.313585
Target:  5'- uGCCGUCGGUGaCggaCGUG-GCCAUCg- -3'
miRNA:   3'- gCGGCGGCCAC-Ga--GCGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 53535 0.67 0.306356
Target:  5'- uGUCGUCGGUGCg-GCGUGCCu---- -3'
miRNA:   3'- gCGGCGGCCACGagCGCACGGuggau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.