miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19256 5' -63.1 NC_004684.1 + 23573 0.66 0.343786
Target:  5'- aGCCuGCCGG-GCcgCGCGaacaccGCCGCCg- -3'
miRNA:   3'- gCGG-CGGCCaCGa-GCGCa-----CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 21245 0.66 0.343786
Target:  5'- gGCCGCgaGGUGUUCGUGcGCCAg--- -3'
miRNA:   3'- gCGGCGg-CCACGAGCGCaCGGUggau -5'
19256 5' -63.1 NC_004684.1 + 37100 0.67 0.336812
Target:  5'- uGCUGCggagaacguugaggaGG-GCUgGCGUGCCGCCa- -3'
miRNA:   3'- gCGGCGg--------------CCaCGAgCGCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 41567 0.67 0.336044
Target:  5'- gGCCGCCGaUGC-CGUucugGCCGCCa- -3'
miRNA:   3'- gCGGCGGCcACGaGCGca--CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 40930 0.67 0.32843
Target:  5'- aCGCUGUCGcG-GCcagGCGUGCCGCCg- -3'
miRNA:   3'- -GCGGCGGC-CaCGag-CGCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 64803 0.67 0.328429
Target:  5'- aCGCCGuuGGUGCugucgaguUCGUGgGCCAUg-- -3'
miRNA:   3'- -GCGGCggCCACG--------AGCGCaCGGUGgau -5'
19256 5' -63.1 NC_004684.1 + 9548 0.67 0.327675
Target:  5'- gCGCCgguuggaGCCGGUGCgcCGCGaacacgugGCCgACCUGa -3'
miRNA:   3'- -GCGG-------CGGCCACGa-GCGCa-------CGG-UGGAU- -5'
19256 5' -63.1 NC_004684.1 + 23220 0.67 0.320943
Target:  5'- gCGCgCGCCGG-GUucaUCGcCGUGCCGCa-- -3'
miRNA:   3'- -GCG-GCGGCCaCG---AGC-GCACGGUGgau -5'
19256 5' -63.1 NC_004684.1 + 26063 0.67 0.320943
Target:  5'- gGCCGUCGGcGgUCGCGgUGCCguaGCCc- -3'
miRNA:   3'- gCGGCGGCCaCgAGCGC-ACGG---UGGau -5'
19256 5' -63.1 NC_004684.1 + 26436 0.67 0.320943
Target:  5'- uCGCCGCCGGUgGCcCG-GUGUacggcggcaCGCCUGg -3'
miRNA:   3'- -GCGGCGGCCA-CGaGCgCACG---------GUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 61359 0.67 0.320943
Target:  5'- gGCCGCgaGGcGCUgGCGgccuaaagGCCACCg- -3'
miRNA:   3'- gCGGCGg-CCaCGAgCGCa-------CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 5964 0.67 0.320202
Target:  5'- uGCCGCCGGUGUcccguauuguggUCauguacgGCGggacggacccGCCACCUGa -3'
miRNA:   3'- gCGGCGGCCACG------------AG-------CGCa---------CGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 56806 0.67 0.313585
Target:  5'- uGCCGUCGGUGaCggaCGUG-GCCAUCg- -3'
miRNA:   3'- gCGGCGGCCAC-Ga--GCGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 58164 0.67 0.313585
Target:  5'- gGgaGCCGGUGCgacUGUGCCGCCa- -3'
miRNA:   3'- gCggCGGCCACGagcGCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 48516 0.67 0.306357
Target:  5'- aGCCGCgcUGGUGCccugagUGCG-GCCACCc- -3'
miRNA:   3'- gCGGCG--GCCACGa-----GCGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 53535 0.67 0.306356
Target:  5'- uGUCGUCGGUGCg-GCGUGCCu---- -3'
miRNA:   3'- gCGGCGGCCACGagCGCACGGuggau -5'
19256 5' -63.1 NC_004684.1 + 48368 0.67 0.304926
Target:  5'- gGCCGCCGGUGCcaaccCggagaccagcgaccuGCGcgagcuggccgagauUGCCGCCUAc -3'
miRNA:   3'- gCGGCGGCCACGa----G---------------CGC---------------ACGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 17641 0.67 0.303501
Target:  5'- cCG-CGCUGGUGCgcuccgugccgaGCGUGCCGCUg- -3'
miRNA:   3'- -GCgGCGGCCACGag----------CGCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 7708 0.67 0.299255
Target:  5'- cCGUCGCCGuGgcgcugGC-CGUGaGCCACCUGa -3'
miRNA:   3'- -GCGGCGGC-Ca-----CGaGCGCaCGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 51698 0.67 0.299255
Target:  5'- aCGauGCCGGUgGCgUCG-GUGCCGCCg- -3'
miRNA:   3'- -GCggCGGCCA-CG-AGCgCACGGUGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.