miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19257 3' -56.8 NC_004684.1 + 40392 0.66 0.712044
Target:  5'- uGUUGAuCGCCgcGCcCGCCgCGCUCGc -3'
miRNA:   3'- gCAACUcGCGGaaCGcGUGG-GUGAGC- -5'
19257 3' -56.8 NC_004684.1 + 65690 0.66 0.712044
Target:  5'- ----aGGCGCUUcuugcgcucgaUGCGCGCCaGCUCGg -3'
miRNA:   3'- gcaacUCGCGGA-----------ACGCGUGGgUGAGC- -5'
19257 3' -56.8 NC_004684.1 + 58051 0.66 0.709947
Target:  5'- gCGUcUGGuGCGCCacgagcugaccgUGCGCACCgugcaGCUCGa -3'
miRNA:   3'- -GCA-ACU-CGCGGa-----------ACGCGUGGg----UGAGC- -5'
19257 3' -56.8 NC_004684.1 + 28551 0.66 0.701529
Target:  5'- uGUUGAGCGCCaggGC-CACCagGCcgUCGg -3'
miRNA:   3'- gCAACUCGCGGaa-CGcGUGGg-UG--AGC- -5'
19257 3' -56.8 NC_004684.1 + 63081 0.66 0.680313
Target:  5'- ---aGuGCGCCcgGUGCAccgcguCCCACUCGu -3'
miRNA:   3'- gcaaCuCGCGGaaCGCGU------GGGUGAGC- -5'
19257 3' -56.8 NC_004684.1 + 41418 0.66 0.658924
Target:  5'- ---cGGGuUGCCUUcGCGCACCaGCUUGg -3'
miRNA:   3'- gcaaCUC-GCGGAA-CGCGUGGgUGAGC- -5'
19257 3' -56.8 NC_004684.1 + 65883 0.66 0.657851
Target:  5'- cCGUUGAGCGCg--GCGCGCagguuggCCAC-Ca -3'
miRNA:   3'- -GCAACUCGCGgaaCGCGUG-------GGUGaGc -5'
19257 3' -56.8 NC_004684.1 + 34294 0.67 0.648188
Target:  5'- ---cGAGCGCCUgcgucgGCaGCGCCaCGC-CGg -3'
miRNA:   3'- gcaaCUCGCGGAa-----CG-CGUGG-GUGaGC- -5'
19257 3' -56.8 NC_004684.1 + 60216 0.67 0.637438
Target:  5'- gCGUUGgccucGGCGUUguagGUGCACCCGCaggCGg -3'
miRNA:   3'- -GCAAC-----UCGCGGaa--CGCGUGGGUGa--GC- -5'
19257 3' -56.8 NC_004684.1 + 65762 0.67 0.636363
Target:  5'- gCGUUGGccgccgcGCGCCgguggGCGCGCgCACggCGa -3'
miRNA:   3'- -GCAACU-------CGCGGaa---CGCGUGgGUGa-GC- -5'
19257 3' -56.8 NC_004684.1 + 47661 0.68 0.562556
Target:  5'- gCGUUGGcCGCCUUGaucaGCGCCUuCUUGu -3'
miRNA:   3'- -GCAACUcGCGGAACg---CGUGGGuGAGC- -5'
19257 3' -56.8 NC_004684.1 + 44909 0.68 0.55201
Target:  5'- aCGUUG-GCGUCggUGCGCGCCgggUAgUCGg -3'
miRNA:   3'- -GCAACuCGCGGa-ACGCGUGG---GUgAGC- -5'
19257 3' -56.8 NC_004684.1 + 39316 0.68 0.545711
Target:  5'- ---cGAGCGCCccaguugccGCGCccaggccgguuggccGCCCACUCGu -3'
miRNA:   3'- gcaaCUCGCGGaa-------CGCG---------------UGGGUGAGC- -5'
19257 3' -56.8 NC_004684.1 + 47164 0.68 0.541525
Target:  5'- ---cGGcGCGCCagGCGCACCCAggCGa -3'
miRNA:   3'- gcaaCU-CGCGGaaCGCGUGGGUgaGC- -5'
19257 3' -56.8 NC_004684.1 + 6903 0.69 0.531107
Target:  5'- --cUGGuGCGCC-UGCGCGacauCCCGCUCu -3'
miRNA:   3'- gcaACU-CGCGGaACGCGU----GGGUGAGc -5'
19257 3' -56.8 NC_004684.1 + 55654 0.69 0.531107
Target:  5'- gCGUggagGAGgGCCUggcgGCGCACCaGCUg- -3'
miRNA:   3'- -GCAa---CUCgCGGAa---CGCGUGGgUGAgc -5'
19257 3' -56.8 NC_004684.1 + 10509 0.69 0.531107
Target:  5'- --cUGGGcCGCCgacggucaGCGCGCaCCGCUCGc -3'
miRNA:   3'- gcaACUC-GCGGaa------CGCGUG-GGUGAGC- -5'
19257 3' -56.8 NC_004684.1 + 20563 0.7 0.43563
Target:  5'- --cUGAGCGCCgguugccgacagugUGCGCACgCCACg-- -3'
miRNA:   3'- gcaACUCGCGGa-------------ACGCGUG-GGUGagc -5'
19257 3' -56.8 NC_004684.1 + 1716 0.73 0.305578
Target:  5'- ---aGaAGCGCCUgcugGCGCagGCCUACUCGg -3'
miRNA:   3'- gcaaC-UCGCGGAa---CGCG--UGGGUGAGC- -5'
19257 3' -56.8 NC_004684.1 + 57773 0.74 0.263617
Target:  5'- uGUUcAGCGCCUgcacgGCGCGCUC-CUCGa -3'
miRNA:   3'- gCAAcUCGCGGAa----CGCGUGGGuGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.