miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19258 3' -63.2 NC_004684.1 + 60303 0.66 0.351656
Target:  5'- uCGGCGgccuccagGGCCUCGGCaauGCGUUc -3'
miRNA:   3'- uGCCGCaa------CCGGAGCCGgucCGCGAc -5'
19258 3' -63.2 NC_004684.1 + 28071 0.66 0.351656
Target:  5'- cCGGCGgugUGGCCg-GGCCGccGCGCg- -3'
miRNA:   3'- uGCCGCa--ACCGGagCCGGUc-CGCGac -5'
19258 3' -63.2 NC_004684.1 + 61500 0.66 0.350863
Target:  5'- -aGGCGgcGGCgCUCGaugcgcGCCagcagugacgugcAGGCGCUGg -3'
miRNA:   3'- ugCCGCaaCCG-GAGC------CGG-------------UCCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 4038 0.66 0.349282
Target:  5'- cAUGGCGacggUGGCCUacCGGCCaucgccgggugaccGGGUGgUGg -3'
miRNA:   3'- -UGCCGCa---ACCGGA--GCCGG--------------UCCGCgAC- -5'
19258 3' -63.2 NC_004684.1 + 59768 0.66 0.343786
Target:  5'- cACGGCGagcUGGCuCUcgacCGGCCAGGagGCg- -3'
miRNA:   3'- -UGCCGCa--ACCG-GA----GCCGGUCCg-CGac -5'
19258 3' -63.2 NC_004684.1 + 44966 0.66 0.343786
Target:  5'- gACGGCGaUGGCgUUgaGGcCCAGcGgGCUGg -3'
miRNA:   3'- -UGCCGCaACCGgAG--CC-GGUC-CgCGAC- -5'
19258 3' -63.2 NC_004684.1 + 52230 0.66 0.343786
Target:  5'- -aGGUGcgUGGCggcggCGGCCAGcugcGCGCUGg -3'
miRNA:   3'- ugCCGCa-ACCGga---GCCGGUC----CGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 1033 0.66 0.339125
Target:  5'- cGCGGCGUggGGCCagaaauggCGGCacCGguugugcuggcuggcGGCGCUGg -3'
miRNA:   3'- -UGCCGCAa-CCGGa-------GCCG--GU---------------CCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 40432 0.66 0.336044
Target:  5'- gGCGGCGUUGGCCaccgccUUGGCaauCGGGaCGaUGa -3'
miRNA:   3'- -UGCCGCAACCGG------AGCCG---GUCC-GCgAC- -5'
19258 3' -63.2 NC_004684.1 + 8177 0.66 0.336044
Target:  5'- cCGGgGgc-GCgCUgGGCCAGGCGCa- -3'
miRNA:   3'- uGCCgCaacCG-GAgCCGGUCCGCGac -5'
19258 3' -63.2 NC_004684.1 + 32081 0.67 0.328429
Target:  5'- cACcGCGUcugggUGaGCgUUGGCCAGGCGgUGg -3'
miRNA:   3'- -UGcCGCA-----AC-CGgAGCCGGUCCGCgAC- -5'
19258 3' -63.2 NC_004684.1 + 18626 0.67 0.328429
Target:  5'- cCGGCGUcGGCaagucCaGCguGGCGCUGg -3'
miRNA:   3'- uGCCGCAaCCGga---GcCGguCCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 44324 0.67 0.328429
Target:  5'- -aGGCGUcgaaccgguUGGCCagcUUGGCCAGGCcGUc- -3'
miRNA:   3'- ugCCGCA---------ACCGG---AGCCGGUCCG-CGac -5'
19258 3' -63.2 NC_004684.1 + 33717 0.67 0.327675
Target:  5'- aGCGGCGgUGGCCcgaacUacucgacgcagcgCGGCCAGGaCGCc- -3'
miRNA:   3'- -UGCCGCaACCGG-----A-------------GCCGGUCC-GCGac -5'
19258 3' -63.2 NC_004684.1 + 25169 0.67 0.327675
Target:  5'- -gGGUGccgacGCCaucuccgaccuggUUGGCCAGGCGCUGg -3'
miRNA:   3'- ugCCGCaac--CGG-------------AGCCGGUCCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 58883 0.67 0.320943
Target:  5'- cUGGCGUUGGCgaUGGUCuugguGGUGCg- -3'
miRNA:   3'- uGCCGCAACCGgaGCCGGu----CCGCGac -5'
19258 3' -63.2 NC_004684.1 + 44388 0.67 0.320943
Target:  5'- gACGGC---GGCCagUCGGcCCAGGcCGUUGa -3'
miRNA:   3'- -UGCCGcaaCCGG--AGCC-GGUCC-GCGAC- -5'
19258 3' -63.2 NC_004684.1 + 64043 0.67 0.316513
Target:  5'- gGCGGUGUcGGCCUCGaacaccucguugagcGCCuuGCGCa- -3'
miRNA:   3'- -UGCCGCAaCCGGAGC---------------CGGucCGCGac -5'
19258 3' -63.2 NC_004684.1 + 18394 0.67 0.313585
Target:  5'- aGCGGgGUcgGGCC-CGGCCAGcagggcaccgacGCGCc- -3'
miRNA:   3'- -UGCCgCAa-CCGGaGCCGGUC------------CGCGac -5'
19258 3' -63.2 NC_004684.1 + 13981 0.67 0.313585
Target:  5'- cGCGGCGcaGGCCagccCGGCCAccuggacacGGUGCa- -3'
miRNA:   3'- -UGCCGCaaCCGGa---GCCGGU---------CCGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.