Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19258 | 5' | -57.2 | NC_004684.1 | + | 64265 | 1.08 | 0.001045 |
Target: 5'- gCACACCACCCGAACGGGGGAGAUGACc -3' miRNA: 3'- -GUGUGGUGGGCUUGCCCCCUCUACUG- -5' |
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19258 | 5' | -57.2 | NC_004684.1 | + | 21528 | 0.66 | 0.684521 |
Target: 5'- gACACCACcaCCGAGCuGGcGGuGGUGGa -3' miRNA: 3'- gUGUGGUG--GGCUUGcCC-CCuCUACUg -5' |
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19258 | 5' | -57.2 | NC_004684.1 | + | 40726 | 0.66 | 0.652612 |
Target: 5'- gACgACCAgCgCG-GCGGGGGcGGUGGCg -3' miRNA: 3'- gUG-UGGUgG-GCuUGCCCCCuCUACUG- -5' |
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19258 | 5' | -57.2 | NC_004684.1 | + | 9308 | 0.66 | 0.63872 |
Target: 5'- gGCGCUACCCcccgccgaggaacaGGACGGGGacGAGGaGGCc -3' miRNA: 3'- gUGUGGUGGG--------------CUUGCCCC--CUCUaCUG- -5' |
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19258 | 5' | -57.2 | NC_004684.1 | + | 7967 | 0.67 | 0.631234 |
Target: 5'- aGCuCCACCCGGACGGacGGcaGGAgGACg -3' miRNA: 3'- gUGuGGUGGGCUUGCCc-CC--UCUaCUG- -5' |
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19258 | 5' | -57.2 | NC_004684.1 | + | 60754 | 0.68 | 0.582189 |
Target: 5'- --gGCCG-CCGggUGGGGGuuggucaggacuugaAGAUGGCg -3' miRNA: 3'- gugUGGUgGGCuuGCCCCC---------------UCUACUG- -5' |
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19258 | 5' | -57.2 | NC_004684.1 | + | 54281 | 0.69 | 0.505301 |
Target: 5'- -cCGCCACCCGGcCGGGGGuGcgcGCa -3' miRNA: 3'- guGUGGUGGGCUuGCCCCCuCuacUG- -5' |
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19258 | 5' | -57.2 | NC_004684.1 | + | 19764 | 0.69 | 0.485239 |
Target: 5'- gCGCgGCCugCCGGugcccgcCGGGGGcgacaAGAUGGCg -3' miRNA: 3'- -GUG-UGGugGGCUu------GCCCCC-----UCUACUG- -5' |
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19258 | 5' | -57.2 | NC_004684.1 | + | 50648 | 0.69 | 0.485239 |
Target: 5'- gACACCGCCgu--CGGGGGuGcgGACc -3' miRNA: 3'- gUGUGGUGGgcuuGCCCCCuCuaCUG- -5' |
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19258 | 5' | -57.2 | NC_004684.1 | + | 30479 | 0.71 | 0.391365 |
Target: 5'- gCACGCUcggcuaugACCCGAGCGuGGGGcGGcUGGCg -3' miRNA: 3'- -GUGUGG--------UGGGCUUGC-CCCCuCU-ACUG- -5' |
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19258 | 5' | -57.2 | NC_004684.1 | + | 48861 | 0.71 | 0.382645 |
Target: 5'- uCGCGCCaguGCgCGAACGGGGc-GAUGACc -3' miRNA: 3'- -GUGUGG---UGgGCUUGCCCCcuCUACUG- -5' |
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19258 | 5' | -57.2 | NC_004684.1 | + | 61168 | 0.72 | 0.357269 |
Target: 5'- --aGCCACCCGGccaggucgGCGGGGuuGGUGGCc -3' miRNA: 3'- gugUGGUGGGCU--------UGCCCCcuCUACUG- -5' |
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19258 | 5' | -57.2 | NC_004684.1 | + | 10817 | 0.68 | 0.567391 |
Target: 5'- --aGCUcCuuGAGgguguCGGGGGAGAUGGCg -3' miRNA: 3'- gugUGGuGggCUU-----GCCCCCUCUACUG- -5' |
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19258 | 5' | -57.2 | NC_004684.1 | + | 22193 | 0.68 | 0.546425 |
Target: 5'- gCGCuGCCGCUgGAGCGcggcGGGGuGGUGGCc -3' miRNA: 3'- -GUG-UGGUGGgCUUGC----CCCCuCUACUG- -5' |
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19258 | 5' | -57.2 | NC_004684.1 | + | 5593 | 0.69 | 0.515465 |
Target: 5'- -cCGCCugCCG-ACGGGGccGAGcUGGCg -3' miRNA: 3'- guGUGGugGGCuUGCCCC--CUCuACUG- -5' |
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19258 | 5' | -57.2 | NC_004684.1 | + | 27407 | 0.7 | 0.436855 |
Target: 5'- cCACACCgaccagguGCCCgGAGCGcaGGGGAUGGCg -3' miRNA: 3'- -GUGUGG--------UGGG-CUUGCccCCUCUACUG- -5' |
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19258 | 5' | -57.2 | NC_004684.1 | + | 35611 | 0.72 | 0.333099 |
Target: 5'- aGCGCCAuguuCCCGGucuCGGGGucGAUGGCg -3' miRNA: 3'- gUGUGGU----GGGCUu--GCCCCcuCUACUG- -5' |
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19258 | 5' | -57.2 | NC_004684.1 | + | 37426 | 0.74 | 0.267911 |
Target: 5'- gACACCGCCaCGGugGuGGcaccGGAGGUGACc -3' miRNA: 3'- gUGUGGUGG-GCUugC-CC----CCUCUACUG- -5' |
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19258 | 5' | -57.2 | NC_004684.1 | + | 24763 | 0.76 | 0.18261 |
Target: 5'- gGCACCAgcaCCGGcggcgGCGGGGGAGGUGcCg -3' miRNA: 3'- gUGUGGUg--GGCU-----UGCCCCCUCUACuG- -5' |
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19258 | 5' | -57.2 | NC_004684.1 | + | 39297 | 0.66 | 0.695076 |
Target: 5'- cCGCACCACCCGGuGCGGGucgcgcGGCg -3' miRNA: 3'- -GUGUGGUGGGCU-UGCCCccucuaCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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