miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19258 5' -57.2 NC_004684.1 + 5593 0.69 0.515465
Target:  5'- -cCGCCugCCG-ACGGGGccGAGcUGGCg -3'
miRNA:   3'- guGUGGugGGCuUGCCCC--CUCuACUG- -5'
19258 5' -57.2 NC_004684.1 + 54281 0.69 0.505301
Target:  5'- -cCGCCACCCGGcCGGGGGuGcgcGCa -3'
miRNA:   3'- guGUGGUGGGCUuGCCCCCuCuacUG- -5'
19258 5' -57.2 NC_004684.1 + 50648 0.69 0.485239
Target:  5'- gACACCGCCgu--CGGGGGuGcgGACc -3'
miRNA:   3'- gUGUGGUGGgcuuGCCCCCuCuaCUG- -5'
19258 5' -57.2 NC_004684.1 + 19764 0.69 0.485239
Target:  5'- gCGCgGCCugCCGGugcccgcCGGGGGcgacaAGAUGGCg -3'
miRNA:   3'- -GUG-UGGugGGCUu------GCCCCC-----UCUACUG- -5'
19258 5' -57.2 NC_004684.1 + 27407 0.7 0.436855
Target:  5'- cCACACCgaccagguGCCCgGAGCGcaGGGGAUGGCg -3'
miRNA:   3'- -GUGUGG--------UGGG-CUUGCccCCUCUACUG- -5'
19258 5' -57.2 NC_004684.1 + 30479 0.71 0.391365
Target:  5'- gCACGCUcggcuaugACCCGAGCGuGGGGcGGcUGGCg -3'
miRNA:   3'- -GUGUGG--------UGGGCUUGC-CCCCuCU-ACUG- -5'
19258 5' -57.2 NC_004684.1 + 48861 0.71 0.382645
Target:  5'- uCGCGCCaguGCgCGAACGGGGc-GAUGACc -3'
miRNA:   3'- -GUGUGG---UGgGCUUGCCCCcuCUACUG- -5'
19258 5' -57.2 NC_004684.1 + 61168 0.72 0.357269
Target:  5'- --aGCCACCCGGccaggucgGCGGGGuuGGUGGCc -3'
miRNA:   3'- gugUGGUGGGCU--------UGCCCCcuCUACUG- -5'
19258 5' -57.2 NC_004684.1 + 35611 0.72 0.333099
Target:  5'- aGCGCCAuguuCCCGGucuCGGGGucGAUGGCg -3'
miRNA:   3'- gUGUGGU----GGGCUu--GCCCCcuCUACUG- -5'
19258 5' -57.2 NC_004684.1 + 37426 0.74 0.267911
Target:  5'- gACACCGCCaCGGugGuGGcaccGGAGGUGACc -3'
miRNA:   3'- gUGUGGUGG-GCUugC-CC----CCUCUACUG- -5'
19258 5' -57.2 NC_004684.1 + 24763 0.76 0.18261
Target:  5'- gGCACCAgcaCCGGcggcgGCGGGGGAGGUGcCg -3'
miRNA:   3'- gUGUGGUg--GGCU-----UGCCCCCUCUACuG- -5'
19258 5' -57.2 NC_004684.1 + 2005 0.76 0.177874
Target:  5'- gGCAgCGCCUGggUGGGGGuccgcGAUGACc -3'
miRNA:   3'- gUGUgGUGGGCuuGCCCCCu----CUACUG- -5'
19258 5' -57.2 NC_004684.1 + 64265 1.08 0.001045
Target:  5'- gCACACCACCCGAACGGGGGAGAUGACc -3'
miRNA:   3'- -GUGUGGUGGGCUUGCCCCCUCUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.