miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19259 5' -56.4 NC_004684.1 + 63522 0.67 0.691411
Target:  5'- aGGCCUUGgcaCUGcGcAGCGGCgUGCCuuCg -3'
miRNA:   3'- -CCGGAGCaa-GAC-C-UUGCCG-ACGGugG- -5'
19259 5' -56.4 NC_004684.1 + 40437 0.67 0.69141
Target:  5'- cGGCCUUGgUCagcGGugcccaGGCgGCCGCCu -3'
miRNA:   3'- -CCGGAGCaAGa--CCuug---CCGaCGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 40362 0.67 0.69141
Target:  5'- cGGCCUUGgccUUGGGGgccuCGGCggugGCgGCCu -3'
miRNA:   3'- -CCGGAGCaa-GACCUU----GCCGa---CGgUGG- -5'
19259 5' -56.4 NC_004684.1 + 54960 0.67 0.680823
Target:  5'- uGCUUCGcgCgggGuGAACGGgUGgCCGCCg -3'
miRNA:   3'- cCGGAGCaaGa--C-CUUGCCgAC-GGUGG- -5'
19259 5' -56.4 NC_004684.1 + 18633 0.67 0.680823
Target:  5'- cGGCaaguccagCGUggcgCUGGAcAUGGcCUGCCACa -3'
miRNA:   3'- -CCGga------GCAa---GACCU-UGCC-GACGGUGg -5'
19259 5' -56.4 NC_004684.1 + 20349 0.67 0.680823
Target:  5'- cGGCCUCcgggUGGGGCGGCUacugcgaagGCCAg- -3'
miRNA:   3'- -CCGGAGcaagACCUUGCCGA---------CGGUgg -5'
19259 5' -56.4 NC_004684.1 + 23969 0.67 0.680823
Target:  5'- cGGCCUCGccgggccUCgGGuucgGCGGCgGCgACCc -3'
miRNA:   3'- -CCGGAGCa------AGaCCu---UGCCGaCGgUGG- -5'
19259 5' -56.4 NC_004684.1 + 23703 0.67 0.680823
Target:  5'- uGGCCUCcaacCUGG-GCGGCgGCgCGCUc -3'
miRNA:   3'- -CCGGAGcaa-GACCuUGCCGaCG-GUGG- -5'
19259 5' -56.4 NC_004684.1 + 23640 0.67 0.680823
Target:  5'- cGGCCUUG--CUGGcACcGCUGCUgACCg -3'
miRNA:   3'- -CCGGAGCaaGACCuUGcCGACGG-UGG- -5'
19259 5' -56.4 NC_004684.1 + 30475 0.67 0.670192
Target:  5'- cGGCCUCGacC-GGuGCGa-UGCCACCg -3'
miRNA:   3'- -CCGGAGCaaGaCCuUGCcgACGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 37146 0.67 0.670192
Target:  5'- cGCCgccaGUUCUgGGAGCGcGCcgaggGCCACg -3'
miRNA:   3'- cCGGag--CAAGA-CCUUGC-CGa----CGGUGg -5'
19259 5' -56.4 NC_004684.1 + 66653 0.67 0.670192
Target:  5'- uGGCCUCGgc----GGCGGCccgGUCACCg -3'
miRNA:   3'- -CCGGAGCaagaccUUGCCGa--CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 49290 0.67 0.670192
Target:  5'- cGGCCUCGcgCUcGG--UGGCcuUGCCGuCCa -3'
miRNA:   3'- -CCGGAGCaaGA-CCuuGCCG--ACGGU-GG- -5'
19259 5' -56.4 NC_004684.1 + 30958 0.67 0.659526
Target:  5'- uGGaCUCGcUgUGGAACGGCgugGUcggCACCg -3'
miRNA:   3'- -CCgGAGCaAgACCUUGCCGa--CG---GUGG- -5'
19259 5' -56.4 NC_004684.1 + 49554 0.67 0.648837
Target:  5'- uGGCCgacuUCGggCUGGcgUGGCcuucGCCugCg -3'
miRNA:   3'- -CCGG----AGCaaGACCuuGCCGa---CGGugG- -5'
19259 5' -56.4 NC_004684.1 + 52431 0.67 0.648837
Target:  5'- aGGCCggGggUCUcGAuguCGGCcGCCACCg -3'
miRNA:   3'- -CCGGagCa-AGAcCUu--GCCGaCGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 2042 0.67 0.648837
Target:  5'- cGCCcUGUUCgUGGAcuACGGCcagcGCCACg -3'
miRNA:   3'- cCGGaGCAAG-ACCU--UGCCGa---CGGUGg -5'
19259 5' -56.4 NC_004684.1 + 27434 0.67 0.638133
Target:  5'- uGGUggCGgcaUUGGAGCGcGgUGCCACCa -3'
miRNA:   3'- -CCGgaGCaa-GACCUUGC-CgACGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 7489 0.67 0.638133
Target:  5'- uGGCCUgG--CUGGuugucuACGcGCUGgCCGCCg -3'
miRNA:   3'- -CCGGAgCaaGACCu-----UGC-CGAC-GGUGG- -5'
19259 5' -56.4 NC_004684.1 + 57582 0.67 0.638133
Target:  5'- uGGCCUUGagCgu---CGGgUGCCACCg -3'
miRNA:   3'- -CCGGAGCaaGaccuuGCCgACGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.