miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1926 3' -48.9 NC_001347.2 + 8335 0.66 0.999948
Target:  5'- -aGUUCcaagCgcCGAggguagguGCGUUUCGGCGCCg -3'
miRNA:   3'- agCAAGa---GauGCU--------UGUAGAGCUGCGG- -5'
1926 3' -48.9 NC_001347.2 + 172973 0.66 0.999948
Target:  5'- -aGUUCUacgUGCaGGACAUCUCGGaccugucgGCCa -3'
miRNA:   3'- agCAAGAg--AUG-CUUGUAGAGCUg-------CGG- -5'
1926 3' -48.9 NC_001347.2 + 142001 0.66 0.999931
Target:  5'- aCGUgagCUCUAUGAGCGgccaagauuaUCGuuucauGCGCCa -3'
miRNA:   3'- aGCAa--GAGAUGCUUGUag--------AGC------UGCGG- -5'
1926 3' -48.9 NC_001347.2 + 183366 0.66 0.999911
Target:  5'- aCGUUgUgUuacguCGGACAgguUCUCGGCGCa -3'
miRNA:   3'- aGCAAgAgAu----GCUUGU---AGAGCUGCGg -5'
1926 3' -48.9 NC_001347.2 + 24651 0.66 0.999911
Target:  5'- cCGgcCUCcugGCGcACAUCcCGGCGCUa -3'
miRNA:   3'- aGCaaGAGa--UGCuUGUAGaGCUGCGG- -5'
1926 3' -48.9 NC_001347.2 + 183539 0.66 0.999884
Target:  5'- cUCGUUUUagcacgcCGAaugucACAUCgUCGGCGCCu -3'
miRNA:   3'- -AGCAAGAgau----GCU-----UGUAG-AGCUGCGG- -5'
1926 3' -48.9 NC_001347.2 + 46645 0.66 0.999852
Target:  5'- gUCG-UCUCuUACuGGCAuucUCUCGGCuGCCu -3'
miRNA:   3'- -AGCaAGAG-AUGcUUGU---AGAGCUG-CGG- -5'
1926 3' -48.9 NC_001347.2 + 156190 0.67 0.999811
Target:  5'- cUGUUUUgUACGAGCGcccgucaagCUCGuuuCGCCg -3'
miRNA:   3'- aGCAAGAgAUGCUUGUa--------GAGCu--GCGG- -5'
1926 3' -48.9 NC_001347.2 + 40159 0.67 0.99976
Target:  5'- cUCGUUC-CUGCGAagccgcACAcCcCGAgGCCg -3'
miRNA:   3'- -AGCAAGaGAUGCU------UGUaGaGCUgCGG- -5'
1926 3' -48.9 NC_001347.2 + 134508 0.67 0.999749
Target:  5'- aUCGUg--CUAUuuuuuuacccgccugGAGCAaaaacgcuccuaggcUCUCGACGCCa -3'
miRNA:   3'- -AGCAagaGAUG---------------CUUGU---------------AGAGCUGCGG- -5'
1926 3' -48.9 NC_001347.2 + 111246 0.67 0.999622
Target:  5'- cCGgUCUCUuuccACGGagcaACGUCaugcgCGGCGCCg -3'
miRNA:   3'- aGCaAGAGA----UGCU----UGUAGa----GCUGCGG- -5'
1926 3' -48.9 NC_001347.2 + 1300 0.67 0.99953
Target:  5'- aCGgaUUCUACGcGCGgg-UGACGCCg -3'
miRNA:   3'- aGCaaGAGAUGCuUGUagaGCUGCGG- -5'
1926 3' -48.9 NC_001347.2 + 195594 0.68 0.99942
Target:  5'- -aGUUC-CUGCGcGCcUCcUGACGCCg -3'
miRNA:   3'- agCAAGaGAUGCuUGuAGaGCUGCGG- -5'
1926 3' -48.9 NC_001347.2 + 151747 0.69 0.998163
Target:  5'- uUCGUcggugcUCUCUAaGGACAUCUCGcuguacCGUCa -3'
miRNA:   3'- -AGCA------AGAGAUgCUUGUAGAGCu-----GCGG- -5'
1926 3' -48.9 NC_001347.2 + 47456 0.69 0.997814
Target:  5'- aUCGgcCUCgACGAACGagacgCggCGACGCCu -3'
miRNA:   3'- -AGCaaGAGaUGCUUGUa----Ga-GCUGCGG- -5'
1926 3' -48.9 NC_001347.2 + 182751 0.69 0.997411
Target:  5'- cCGUUC-C-ACGAACAUacgUCGGCGCa -3'
miRNA:   3'- aGCAAGaGaUGCUUGUAg--AGCUGCGg -5'
1926 3' -48.9 NC_001347.2 + 76756 0.7 0.996419
Target:  5'- cUCGUgcggCUCgcacacGCGGuagcguuccaGCGUCUCGugGCUa -3'
miRNA:   3'- -AGCAa---GAGa-----UGCU----------UGUAGAGCugCGG- -5'
1926 3' -48.9 NC_001347.2 + 16803 0.7 0.996419
Target:  5'- aCGUgcgUCgccgCUACGAACAcggUCUaCGGCGCg -3'
miRNA:   3'- aGCA---AGa---GAUGCUUGU---AGA-GCUGCGg -5'
1926 3' -48.9 NC_001347.2 + 173621 0.7 0.995816
Target:  5'- aCGaUCUCaugaACGAGCccauggGUCUCGGCGUCu -3'
miRNA:   3'- aGCaAGAGa---UGCUUG------UAGAGCUGCGG- -5'
1926 3' -48.9 NC_001347.2 + 119968 0.71 0.98891
Target:  5'- cCGUcacuccuaUCUCaaagacuCGGACuuUCUCGACGCCg -3'
miRNA:   3'- aGCA--------AGAGau-----GCUUGu-AGAGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.