miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1926 5' -55.6 NC_001347.2 + 121725 0.66 0.971588
Target:  5'- gAUGAUGGUgaGAGACGUCCCuaAGAuGGu -3'
miRNA:   3'- -UGCUGCCG--UUCUGCAGGGccUCUuCU- -5'
1926 5' -55.6 NC_001347.2 + 143001 0.66 0.971588
Target:  5'- gGCGGCGGC-GGugGU---GGAGGAGGu -3'
miRNA:   3'- -UGCUGCCGuUCugCAgggCCUCUUCU- -5'
1926 5' -55.6 NC_001347.2 + 60060 0.66 0.971588
Target:  5'- gAUGugGggguGCGGGugGUCCCGGAu---- -3'
miRNA:   3'- -UGCugC----CGUUCugCAGGGCCUcuucu -5'
1926 5' -55.6 NC_001347.2 + 82734 0.66 0.971588
Target:  5'- aGCGGCGGCuGAG-CGgucaUCCuCGGAcaGAAGAg -3'
miRNA:   3'- -UGCUGCCG-UUCuGC----AGG-GCCU--CUUCU- -5'
1926 5' -55.6 NC_001347.2 + 156810 0.66 0.970762
Target:  5'- aGCGGCGGgcCAGGACGUCggaggguccgcgcgUCGGccucuGGAGGAg -3'
miRNA:   3'- -UGCUGCC--GUUCUGCAG--------------GGCC-----UCUUCU- -5'
1926 5' -55.6 NC_001347.2 + 77082 0.66 0.968768
Target:  5'- aGCGGCGGCAgaAGAgGaggCGGAGGAGu -3'
miRNA:   3'- -UGCUGCCGU--UCUgCaggGCCUCUUCu -5'
1926 5' -55.6 NC_001347.2 + 152392 0.66 0.968475
Target:  5'- uGCGACGGCGGGuggagaugaggcgGCGUggaCUgGGAcGAGGAg -3'
miRNA:   3'- -UGCUGCCGUUC-------------UGCA---GGgCCU-CUUCU- -5'
1926 5' -55.6 NC_001347.2 + 210260 0.66 0.965754
Target:  5'- cCGGCuGCGauGGugGaUCCGGAGggGGg -3'
miRNA:   3'- uGCUGcCGU--UCugCaGGGCCUCuuCU- -5'
1926 5' -55.6 NC_001347.2 + 66928 0.66 0.962541
Target:  5'- uGCGGCGGCAacGGGCGcgacaCCGGcGAcGGAa -3'
miRNA:   3'- -UGCUGCCGU--UCUGCag---GGCCuCU-UCU- -5'
1926 5' -55.6 NC_001347.2 + 44037 0.66 0.962541
Target:  5'- gGCGACGGCAgcGGugGUggCgCUGGGGguGGc -3'
miRNA:   3'- -UGCUGCCGU--UCugCA--G-GGCCUCuuCU- -5'
1926 5' -55.6 NC_001347.2 + 188985 0.66 0.962541
Target:  5'- cCGACGGCGc--CGUugCCCGGGGAuauGAa -3'
miRNA:   3'- uGCUGCCGUucuGCA--GGGCCUCUu--CU- -5'
1926 5' -55.6 NC_001347.2 + 142432 0.66 0.962541
Target:  5'- gGCGuCGGCGcGGCGUCCggcguCGGGGguGGc -3'
miRNA:   3'- -UGCuGCCGUuCUGCAGG-----GCCUCuuCU- -5'
1926 5' -55.6 NC_001347.2 + 132934 0.66 0.959125
Target:  5'- aACGAUGGUGAGAgGUCgCCaccGAGggGu -3'
miRNA:   3'- -UGCUGCCGUUCUgCAG-GGc--CUCuuCu -5'
1926 5' -55.6 NC_001347.2 + 2830 0.66 0.958059
Target:  5'- -aGACGaCGAGgauuggaaaccgucGCGUcucCCCGGAGAAGAu -3'
miRNA:   3'- ugCUGCcGUUC--------------UGCA---GGGCCUCUUCU- -5'
1926 5' -55.6 NC_001347.2 + 152308 0.67 0.9555
Target:  5'- aGCGGCGGC-GGugGUgaCUGGGGAcGGu -3'
miRNA:   3'- -UGCUGCCGuUCugCAg-GGCCUCUuCU- -5'
1926 5' -55.6 NC_001347.2 + 136075 0.67 0.9555
Target:  5'- -gGGCGGUggGACGggCCCGcGGAcGGAc -3'
miRNA:   3'- ugCUGCCGuuCUGCa-GGGCcUCU-UCU- -5'
1926 5' -55.6 NC_001347.2 + 59131 0.67 0.94761
Target:  5'- aGCaGCGGCGGGGCGagcaCCGGAccccgcaaGAAGAa -3'
miRNA:   3'- -UGcUGCCGUUCUGCag--GGCCU--------CUUCU- -5'
1926 5' -55.6 NC_001347.2 + 124980 0.67 0.938847
Target:  5'- cCGACGGUGAGacccGCGUCCCuGGGGc--- -3'
miRNA:   3'- uGCUGCCGUUC----UGCAGGG-CCUCuucu -5'
1926 5' -55.6 NC_001347.2 + 71232 0.68 0.924034
Target:  5'- uCGAUGugcGCAGGuuuCGUCaUCGGAGAAGAa -3'
miRNA:   3'- uGCUGC---CGUUCu--GCAG-GGCCUCUUCU- -5'
1926 5' -55.6 NC_001347.2 + 155290 0.68 0.91189
Target:  5'- aGCGGCGGCGacggagcugguGGACGgggccgggcuggUCgGGGGAAGAa -3'
miRNA:   3'- -UGCUGCCGU-----------UCUGCa-----------GGgCCUCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.