miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19260 5' -54.2 NC_004684.1 + 4110 0.67 0.797331
Target:  5'- gCAgGGAuACGCCcggcgGCUCcagguCCAGGAGCg -3'
miRNA:   3'- gGUgUCUuUGCGG-----CGAG-----GGUCCUUGg -5'
19260 5' -54.2 NC_004684.1 + 47037 0.67 0.797331
Target:  5'- uUCGCAGua--GCCGC-CCCAcccGGAgGCCg -3'
miRNA:   3'- -GGUGUCuuugCGGCGaGGGU---CCU-UGG- -5'
19260 5' -54.2 NC_004684.1 + 38603 0.67 0.787732
Target:  5'- aCCAgcuCGGAAccggguggcAUGCCGCUgaCCUggagcGGGAACCg -3'
miRNA:   3'- -GGU---GUCUU---------UGCGGCGA--GGG-----UCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 65025 0.67 0.786763
Target:  5'- gCCAUAGGcgaccucGugGCUGaggucgUCCCAGGAgaugACCg -3'
miRNA:   3'- -GGUGUCU-------UugCGGCg-----AGGGUCCU----UGG- -5'
19260 5' -54.2 NC_004684.1 + 9720 0.67 0.777976
Target:  5'- uCCugAu-GugGCCGCUaCCCGGuGAGuCCa -3'
miRNA:   3'- -GGugUcuUugCGGCGA-GGGUC-CUU-GG- -5'
19260 5' -54.2 NC_004684.1 + 21757 0.67 0.777976
Target:  5'- gCCGCGcGcuGCGCCuGUUCCCcGGcaaGACCg -3'
miRNA:   3'- -GGUGU-CuuUGCGG-CGAGGGuCC---UUGG- -5'
19260 5' -54.2 NC_004684.1 + 3168 0.67 0.777976
Target:  5'- gCCG-AGGccAACGCCGUgUCCCAGGugUCg -3'
miRNA:   3'- -GGUgUCU--UUGCGGCG-AGGGUCCuuGG- -5'
19260 5' -54.2 NC_004684.1 + 10441 0.67 0.776992
Target:  5'- uCCACGcuguGCGCCGUgcaccagUCCCGGGcGCg -3'
miRNA:   3'- -GGUGUcuu-UGCGGCG-------AGGGUCCuUGg -5'
19260 5' -54.2 NC_004684.1 + 17541 0.67 0.776992
Target:  5'- gCCGCuacgugcuGAuccCGCCGUccucgcgUCCCgAGGGACCg -3'
miRNA:   3'- -GGUGu-------CUuu-GCGGCG-------AGGG-UCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 20556 0.67 0.772051
Target:  5'- gCCGCAGcuGAGCGCCgguugccgacaguguGCgcacgCCaCGGGGACUa -3'
miRNA:   3'- -GGUGUC--UUUGCGG---------------CGa----GG-GUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 30866 0.67 0.768074
Target:  5'- cUCGCuGAucccgAACGCCGUgCCCAGGcucagcgucccGGCCu -3'
miRNA:   3'- -GGUGuCU-----UUGCGGCGaGGGUCC-----------UUGG- -5'
19260 5' -54.2 NC_004684.1 + 3855 0.67 0.768074
Target:  5'- aCCACAccGAAggcACGCCGCUgCgCAGu-GCCa -3'
miRNA:   3'- -GGUGU--CUU---UGCGGCGAgG-GUCcuUGG- -5'
19260 5' -54.2 NC_004684.1 + 57505 0.67 0.768074
Target:  5'- aCGCAGGugccuGCGCCGgaUCCCgAGGcgguGGCCc -3'
miRNA:   3'- gGUGUCUu----UGCGGCg-AGGG-UCC----UUGG- -5'
19260 5' -54.2 NC_004684.1 + 46403 0.67 0.765076
Target:  5'- gCCGCAGGAucgggccgaccugcGcCGCCGCUCcgaCCGGGuuguagucgaAACCu -3'
miRNA:   3'- -GGUGUCUU--------------U-GCGGCGAG---GGUCC----------UUGG- -5'
19260 5' -54.2 NC_004684.1 + 56671 0.68 0.761061
Target:  5'- -gGCAGAAACGCCuggcgguGCUggcgcagaagcugggCCCGGGggUg -3'
miRNA:   3'- ggUGUCUUUGCGG-------CGA---------------GGGUCCuuGg -5'
19260 5' -54.2 NC_004684.1 + 12430 0.68 0.758036
Target:  5'- aCCGCAGAGAgcgaccgucugGCUGCgggCCgGGGAGCa -3'
miRNA:   3'- -GGUGUCUUUg----------CGGCGa--GGgUCCUUGg -5'
19260 5' -54.2 NC_004684.1 + 47648 0.68 0.758036
Target:  5'- gCGCAGguACuGCaCGCUC-CAGGuGCCg -3'
miRNA:   3'- gGUGUCuuUG-CG-GCGAGgGUCCuUGG- -5'
19260 5' -54.2 NC_004684.1 + 39321 0.68 0.758036
Target:  5'- gCCcCAGu--UGCCGCgCCCAGGccgguuGGCCg -3'
miRNA:   3'- -GGuGUCuuuGCGGCGaGGGUCC------UUGG- -5'
19260 5' -54.2 NC_004684.1 + 54775 0.68 0.758036
Target:  5'- aCCAUGGcaacgaagaaGAGCG-CGCg-CCAGGAGCCg -3'
miRNA:   3'- -GGUGUC----------UUUGCgGCGagGGUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 24606 0.68 0.757026
Target:  5'- gCCcUGGAGGCccggcagGCCGCUCaaaCCGGGGAUCg -3'
miRNA:   3'- -GGuGUCUUUG-------CGGCGAG---GGUCCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.