miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19261 3' -61.6 NC_004684.1 + 45228 0.68 0.367639
Target:  5'- gCGGCgCUU--GGUGCUGGUCagGCCCGGCa -3'
miRNA:   3'- -GCUG-GAGccCCACGGUCAG--CGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 40331 0.69 0.299353
Target:  5'- aCGACCUCGGcgcuGG-GCaGGUCGCUggCGGCg -3'
miRNA:   3'- -GCUGGAGCC----CCaCGgUCAGCGG--GUCG- -5'
19261 3' -61.6 NC_004684.1 + 50265 0.69 0.299353
Target:  5'- -cACCUUGGGGUcgucgcugGCCAG-CGCCaGGCc -3'
miRNA:   3'- gcUGGAGCCCCA--------CGGUCaGCGGgUCG- -5'
19261 3' -61.6 NC_004684.1 + 54208 0.69 0.299353
Target:  5'- gCGGCCugcUCGGGGccgaGGUCGgCCAGCa -3'
miRNA:   3'- -GCUGG---AGCCCCacggUCAGCgGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 12394 0.69 0.306431
Target:  5'- -uGCgCUCGGuGGUGCaCGGUCGCCguuUAGUg -3'
miRNA:   3'- gcUG-GAGCC-CCACG-GUCAGCGG---GUCG- -5'
19261 3' -61.6 NC_004684.1 + 49055 0.68 0.343735
Target:  5'- uCGGCaggCUCGGccaGGUGCUcGUCGCCCAcGUc -3'
miRNA:   3'- -GCUG---GAGCC---CCACGGuCAGCGGGU-CG- -5'
19261 3' -61.6 NC_004684.1 + 49212 0.68 0.351577
Target:  5'- uCGGCCagUCGGucGGUGCCGG--GCCgGGCg -3'
miRNA:   3'- -GCUGG--AGCC--CCACGGUCagCGGgUCG- -5'
19261 3' -61.6 NC_004684.1 + 26289 0.68 0.359546
Target:  5'- uGACCUCGGccaucGGUacgcagcucgGCCAGgcCGCCgGGCc -3'
miRNA:   3'- gCUGGAGCC-----CCA----------CGGUCa-GCGGgUCG- -5'
19261 3' -61.6 NC_004684.1 + 55819 0.68 0.359546
Target:  5'- gCGugCgagcaCGGGGUGCCGGUgagcggguacugCGUgCAGUg -3'
miRNA:   3'- -GCugGa----GCCCCACGGUCA------------GCGgGUCG- -5'
19261 3' -61.6 NC_004684.1 + 20536 0.69 0.285577
Target:  5'- -cGCCUgGGuGG-GCCAGgcauUCGUCCAGCu -3'
miRNA:   3'- gcUGGAgCC-CCaCGGUC----AGCGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 66653 0.7 0.272306
Target:  5'- uGGCCUCGGcGGcgGcCCGGUCaccggcgguGCCCAGg -3'
miRNA:   3'- gCUGGAGCC-CCa-C-GGUCAG---------CGGGUCg -5'
19261 3' -61.6 NC_004684.1 + 66508 0.7 0.265859
Target:  5'- gCGGCCUCGcGGGccGCCuucAGcgCgGCCCGGCg -3'
miRNA:   3'- -GCUGGAGC-CCCa-CGG---UCa-G-CGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 1227 0.86 0.018357
Target:  5'- uCGGCCUCGGcGGccugGUCGGUCGCCCGGCc -3'
miRNA:   3'- -GCUGGAGCC-CCa---CGGUCAGCGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 26424 0.73 0.165611
Target:  5'- uGGCagCGGGGUucgccGCCGGUgGCCCGGUg -3'
miRNA:   3'- gCUGgaGCCCCA-----CGGUCAgCGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 24230 0.71 0.213295
Target:  5'- gCGACCUCGGcggucugcucGGUGCCaAGgaagaggUGCgCCAGCu -3'
miRNA:   3'- -GCUGGAGCC----------CCACGG-UCa------GCG-GGUCG- -5'
19261 3' -61.6 NC_004684.1 + 40646 0.71 0.218664
Target:  5'- aCGAaCUUGGGGgccuggccccGCCAGUCGCgcucggCCAGCa -3'
miRNA:   3'- -GCUgGAGCCCCa---------CGGUCAGCG------GGUCG- -5'
19261 3' -61.6 NC_004684.1 + 55030 0.71 0.218664
Target:  5'- -aGCCgaaGGuGGUGCgCAGUgUGCCCAGCg -3'
miRNA:   3'- gcUGGag-CC-CCACG-GUCA-GCGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 19074 0.71 0.224147
Target:  5'- gCGuCCUCGGaGGUGaggCAGUCGCauCCGGUg -3'
miRNA:   3'- -GCuGGAGCC-CCACg--GUCAGCG--GGUCG- -5'
19261 3' -61.6 NC_004684.1 + 60268 0.71 0.235465
Target:  5'- uGuACCUCGGcGGUGgCGGUUgcgugGCCCGGUc -3'
miRNA:   3'- gC-UGGAGCC-CCACgGUCAG-----CGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 50653 0.7 0.265859
Target:  5'- -cGCCgUCGGGGgugcgGaCCAGgcgugCGCCCGGUg -3'
miRNA:   3'- gcUGG-AGCCCCa----C-GGUCa----GCGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.