miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19261 3' -61.6 NC_004684.1 + 5672 0.66 0.445894
Target:  5'- -aGCCguggUCGGaGGUgGCCGGg-GCCCGGCc -3'
miRNA:   3'- gcUGG----AGCC-CCA-CGGUCagCGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 51434 0.66 0.445894
Target:  5'- gGAgUUCGGGGgaGCCGuagcucaugCGCCCGGUg -3'
miRNA:   3'- gCUgGAGCCCCa-CGGUca-------GCGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 25103 0.66 0.436741
Target:  5'- aGcACCUgcUGGGcGUGCUGGaUUGCCCAGg -3'
miRNA:   3'- gC-UGGA--GCCC-CACGGUC-AGCGGGUCg -5'
19261 3' -61.6 NC_004684.1 + 59803 0.66 0.435831
Target:  5'- aCGACCacCGGGuUGCCgcgcaccAGcCGCaCCAGCg -3'
miRNA:   3'- -GCUGGa-GCCCcACGG-------UCaGCG-GGUCG- -5'
19261 3' -61.6 NC_004684.1 + 58929 0.67 0.427697
Target:  5'- -cGCCUcCGGGGacaacaGCCAGgccuugCGCCgGGCc -3'
miRNA:   3'- gcUGGA-GCCCCa-----CGGUCa-----GCGGgUCG- -5'
19261 3' -61.6 NC_004684.1 + 46008 0.67 0.418764
Target:  5'- cCGGCCac--GGUGCgCAcGUCGUCCAGCu -3'
miRNA:   3'- -GCUGGagccCCACG-GU-CAGCGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 5460 0.67 0.418764
Target:  5'- aGGCC-CGgcGGGUGCC-GUgGCCC-GCa -3'
miRNA:   3'- gCUGGaGC--CCCACGGuCAgCGGGuCG- -5'
19261 3' -61.6 NC_004684.1 + 373 0.67 0.418764
Target:  5'- aGGCCaUCGuGGUGCCGGUcaggaucacCGCCgUGGCg -3'
miRNA:   3'- gCUGG-AGCcCCACGGUCA---------GCGG-GUCG- -5'
19261 3' -61.6 NC_004684.1 + 47122 0.67 0.418764
Target:  5'- uCGACCaCaGGG-GCCGGgaacgCGCCgGGCc -3'
miRNA:   3'- -GCUGGaGcCCCaCGGUCa----GCGGgUCG- -5'
19261 3' -61.6 NC_004684.1 + 37944 0.67 0.409946
Target:  5'- uCGAUgUCGaa---CCGGUCGCCCAGCg -3'
miRNA:   3'- -GCUGgAGCcccacGGUCAGCGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 31546 0.67 0.401245
Target:  5'- uCGGCCUgCGGGGagaUGCCuacGUCGaagCUGGCg -3'
miRNA:   3'- -GCUGGA-GCCCC---ACGGu--CAGCg--GGUCG- -5'
19261 3' -61.6 NC_004684.1 + 64114 0.67 0.401245
Target:  5'- uGGCCUCGaacucGGUGCgCAuggucUCGUCCAGCu -3'
miRNA:   3'- gCUGGAGCc----CCACG-GUc----AGCGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 65751 0.67 0.401245
Target:  5'- uGGCCUCGcGGGcguugGCCGccgCGCgCCGGUg -3'
miRNA:   3'- gCUGGAGC-CCCa----CGGUca-GCG-GGUCG- -5'
19261 3' -61.6 NC_004684.1 + 35660 0.67 0.384199
Target:  5'- gGGCCgUCGGcGGcgGUguGUCGCCacCGGCg -3'
miRNA:   3'- gCUGG-AGCC-CCa-CGguCAGCGG--GUCG- -5'
19261 3' -61.6 NC_004684.1 + 61420 0.68 0.375858
Target:  5'- gGACUUCGcucgGCCGGUCGCucaCCGGCg -3'
miRNA:   3'- gCUGGAGCcccaCGGUCAGCG---GGUCG- -5'
19261 3' -61.6 NC_004684.1 + 62972 0.68 0.375858
Target:  5'- gCGugCUCGGuGGUgcgcacgugGCCGGUgGCCgGGa -3'
miRNA:   3'- -GCugGAGCC-CCA---------CGGUCAgCGGgUCg -5'
19261 3' -61.6 NC_004684.1 + 18353 0.68 0.375858
Target:  5'- cCGACCggCGGcgcGGUGCCGcUCGacaucaCCGGCa -3'
miRNA:   3'- -GCUGGa-GCC---CCACGGUcAGCg-----GGUCG- -5'
19261 3' -61.6 NC_004684.1 + 45228 0.68 0.367639
Target:  5'- gCGGCgCUU--GGUGCUGGUCagGCCCGGCa -3'
miRNA:   3'- -GCUG-GAGccCCACGGUCAG--CGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 26289 0.68 0.359546
Target:  5'- uGACCUCGGccaucGGUacgcagcucgGCCAGgcCGCCgGGCc -3'
miRNA:   3'- gCUGGAGCC-----CCA----------CGGUCa-GCGGgUCG- -5'
19261 3' -61.6 NC_004684.1 + 42460 0.68 0.359546
Target:  5'- gGAacuUCUCGGGGUcGCC----GCCCAGCg -3'
miRNA:   3'- gCU---GGAGCCCCA-CGGucagCGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.