miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19261 5' -57.6 NC_004684.1 + 7552 0.67 0.586636
Target:  5'- gGCGGcguucUGGUUCgccuacACCGGCACCGCGc- -3'
miRNA:   3'- -CGCC-----ACUAGGac----UGGCCGUGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 40714 0.67 0.576032
Target:  5'- gGCGGUGG-CCgggacGACCaGCGCgGCGGg -3'
miRNA:   3'- -CGCCACUaGGa----CUGGcCGUGgUGCUa -5'
19261 5' -57.6 NC_004684.1 + 29740 0.67 0.576032
Target:  5'- -gGGUcGAUgCCUGACCGGgCgGCCAUGGc -3'
miRNA:   3'- cgCCA-CUA-GGACUGGCC-G-UGGUGCUa -5'
19261 5' -57.6 NC_004684.1 + 35433 0.67 0.576032
Target:  5'- gGUGGUGAUC--GGCUGGCgucggauugcgGCCACGGa -3'
miRNA:   3'- -CGCCACUAGgaCUGGCCG-----------UGGUGCUa -5'
19261 5' -57.6 NC_004684.1 + 15025 0.67 0.576032
Target:  5'- aGCGG-GAguucgCC-GACCGGCuCCugGAc -3'
miRNA:   3'- -CGCCaCUa----GGaCUGGCCGuGGugCUa -5'
19261 5' -57.6 NC_004684.1 + 37322 0.67 0.565472
Target:  5'- uCGGUGAguggCCgggaGGCCGGUACCAgGc- -3'
miRNA:   3'- cGCCACUa---GGa---CUGGCCGUGGUgCua -5'
19261 5' -57.6 NC_004684.1 + 17994 0.67 0.554963
Target:  5'- gGUGGUGG-CgCUGACCGaGUACgGCGGc -3'
miRNA:   3'- -CGCCACUaG-GACUGGC-CGUGgUGCUa -5'
19261 5' -57.6 NC_004684.1 + 38144 0.67 0.553915
Target:  5'- gGCGGUGAUgCCUugaauggGGCCG-CGCCACa-- -3'
miRNA:   3'- -CGCCACUA-GGA-------CUGGCcGUGGUGcua -5'
19261 5' -57.6 NC_004684.1 + 11598 0.68 0.544511
Target:  5'- cCGGUGcgCCUGGacgaCGGCACCGa--- -3'
miRNA:   3'- cGCCACuaGGACUg---GCCGUGGUgcua -5'
19261 5' -57.6 NC_004684.1 + 36108 0.68 0.534124
Target:  5'- cGCGGUGGgugcgCCUG-CUGGCcuucGCCACa-- -3'
miRNA:   3'- -CGCCACUa----GGACuGGCCG----UGGUGcua -5'
19261 5' -57.6 NC_004684.1 + 19998 0.68 0.522782
Target:  5'- cCGGUGGUCCUGugaccgcACCGGagGCCGUGGUg -3'
miRNA:   3'- cGCCACUAGGAC-------UGGCCg-UGGUGCUA- -5'
19261 5' -57.6 NC_004684.1 + 56877 0.68 0.503415
Target:  5'- aGCGGUGcgCCUGACCGu--CgGCGGc -3'
miRNA:   3'- -CGCCACuaGGACUGGCcguGgUGCUa -5'
19261 5' -57.6 NC_004684.1 + 53717 0.69 0.473498
Target:  5'- cCGGccaccauGUCCUgGACCGuGCGCCACGAg -3'
miRNA:   3'- cGCCac-----UAGGA-CUGGC-CGUGGUGCUa -5'
19261 5' -57.6 NC_004684.1 + 27802 0.69 0.463725
Target:  5'- gGCGGUucGGUCCUGGCCuGCuCCugGu- -3'
miRNA:   3'- -CGCCA--CUAGGACUGGcCGuGGugCua -5'
19261 5' -57.6 NC_004684.1 + 7605 0.69 0.462753
Target:  5'- gGCGGUGuucgccUCCUGGCCGGUcgagagccagcucGCCgugGCGGg -3'
miRNA:   3'- -CGCCACu-----AGGACUGGCCG-------------UGG---UGCUa -5'
19261 5' -57.6 NC_004684.1 + 21060 0.69 0.444501
Target:  5'- -gGGUGccgGUgCUGACCgGGCACCugGGc -3'
miRNA:   3'- cgCCAC---UAgGACUGG-CCGUGGugCUa -5'
19261 5' -57.6 NC_004684.1 + 7516 0.69 0.435059
Target:  5'- cGgGGUGGaCCUGcCCGGCACCGa--- -3'
miRNA:   3'- -CgCCACUaGGACuGGCCGUGGUgcua -5'
19261 5' -57.6 NC_004684.1 + 53773 0.69 0.435058
Target:  5'- gGUGGUcgGGUCCcaGACCGGCGCgGCGc- -3'
miRNA:   3'- -CGCCA--CUAGGa-CUGGCCGUGgUGCua -5'
19261 5' -57.6 NC_004684.1 + 49027 0.7 0.425733
Target:  5'- cCGGUGAUgUcGAgCGGCACCGCGc- -3'
miRNA:   3'- cGCCACUAgGaCUgGCCGUGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 7313 0.7 0.422036
Target:  5'- cCGGUGAaggcccgcacgggCCgccgGGCCGcGCGCCACGAg -3'
miRNA:   3'- cGCCACUa------------GGa---CUGGC-CGUGGUGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.