miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19262 5' -59.4 NC_004684.1 + 63541 0.66 0.564594
Target:  5'- cGGCGUGCcuucgguguGGUCGuCGGUCggcaCGCCGa- -3'
miRNA:   3'- -CUGCACGc--------CCAGU-GCCAGa---GCGGCaa -5'
19262 5' -59.4 NC_004684.1 + 533 0.66 0.533607
Target:  5'- uGACGUGCuGGccagCGCGGUCgagGCCGc- -3'
miRNA:   3'- -CUGCACGcCCa---GUGCCAGag-CGGCaa -5'
19262 5' -59.4 NC_004684.1 + 65441 0.66 0.533607
Target:  5'- uGGCGUGCGGcG-CGCGGcCaccgugCGCCGg- -3'
miRNA:   3'- -CUGCACGCC-CaGUGCCaGa-----GCGGCaa -5'
19262 5' -59.4 NC_004684.1 + 15006 0.66 0.533607
Target:  5'- cGCGaGCaGGUCAUGGUCgagcgggaguUCGCCGa- -3'
miRNA:   3'- cUGCaCGcCCAGUGCCAG----------AGCGGCaa -5'
19262 5' -59.4 NC_004684.1 + 34461 0.67 0.463994
Target:  5'- --aGUGCcucaaGGGUCAUGGUCugugcagcgUCGCCGa- -3'
miRNA:   3'- cugCACG-----CCCAGUGCCAG---------AGCGGCaa -5'
19262 5' -59.4 NC_004684.1 + 61924 0.68 0.426402
Target:  5'- cGGgGUGCGGGcCACGGcaccCGCCGg- -3'
miRNA:   3'- -CUgCACGCCCaGUGCCaga-GCGGCaa -5'
19262 5' -59.4 NC_004684.1 + 64983 0.69 0.382058
Target:  5'- cGCGacGCGGGUCuGCGG-CUCGCCa-- -3'
miRNA:   3'- cUGCa-CGCCCAG-UGCCaGAGCGGcaa -5'
19262 5' -59.4 NC_004684.1 + 43930 0.7 0.325351
Target:  5'- uGAUG-GCGGG-CAUuggcucccaGGUCUCGCCGUc -3'
miRNA:   3'- -CUGCaCGCCCaGUG---------CCAGAGCGGCAa -5'
19262 5' -59.4 NC_004684.1 + 48916 0.7 0.310341
Target:  5'- cACGUGCGGGUCcgcaggccCGGcCUCGUCGc- -3'
miRNA:   3'- cUGCACGCCCAGu-------GCCaGAGCGGCaa -5'
19262 5' -59.4 NC_004684.1 + 56520 0.7 0.310341
Target:  5'- aACGUGCGGaa---GGUCUCGCCGg- -3'
miRNA:   3'- cUGCACGCCcagugCCAGAGCGGCaa -5'
19262 5' -59.4 NC_004684.1 + 65860 0.72 0.249341
Target:  5'- uGCGagcGCGGGUCGC-GUCgUCGCCGUUg -3'
miRNA:   3'- cUGCa--CGCCCAGUGcCAG-AGCGGCAA- -5'
19262 5' -59.4 NC_004684.1 + 8157 0.73 0.209028
Target:  5'- aGCGUGCGGGUCuGCGGgucacgCUCGgCGg- -3'
miRNA:   3'- cUGCACGCCCAG-UGCCa-----GAGCgGCaa -5'
19262 5' -59.4 NC_004684.1 + 67187 1.04 0.001178
Target:  5'- gGACGUGCGGGUCACGGUCUCGCCGUUc -3'
miRNA:   3'- -CUGCACGCCCAGUGCCAGAGCGGCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.