miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 3' -56.4 NC_004685.1 + 43798 0.66 0.724035
Target:  5'- cGGAGucgaucaGCGUCggccGCCCCGAccuGCGCGg -3'
miRNA:   3'- -UCUCug-----CGCAGa---UGGGGUUcu-CGCGU- -5'
19263 3' -56.4 NC_004685.1 + 19851 0.66 0.703
Target:  5'- cGAGAUGaUGUCcacCCCCGAG-GUGCGg -3'
miRNA:   3'- uCUCUGC-GCAGau-GGGGUUCuCGCGU- -5'
19263 3' -56.4 NC_004685.1 + 33052 0.66 0.69982
Target:  5'- -cGGugGCGUUgacggcgaugagcuUGCCCgCGGcGAGCGCAc -3'
miRNA:   3'- ucUCugCGCAG--------------AUGGG-GUU-CUCGCGU- -5'
19263 3' -56.4 NC_004685.1 + 7646 0.66 0.692378
Target:  5'- uGAuGACGCGgugcgCUggaugaacgcgcAUCCCGAGAGUGCc -3'
miRNA:   3'- uCU-CUGCGCa----GA------------UGGGGUUCUCGCGu -5'
19263 3' -56.4 NC_004685.1 + 14526 0.67 0.670975
Target:  5'- cGAuGcCGCaUCUGcguacCCCCGAGGGCGCGc -3'
miRNA:   3'- uCU-CuGCGcAGAU-----GGGGUUCUCGCGU- -5'
19263 3' -56.4 NC_004685.1 + 8274 0.67 0.660216
Target:  5'- aAGGGugGCGgggcguUCUGCCCCugaAGCGgGa -3'
miRNA:   3'- -UCUCugCGC------AGAUGGGGuucUCGCgU- -5'
19263 3' -56.4 NC_004685.1 + 17338 0.67 0.617024
Target:  5'- -aGGugGCGaCUACUUCAAGcgGGCGCGg -3'
miRNA:   3'- ucUCugCGCaGAUGGGGUUC--UCGCGU- -5'
19263 3' -56.4 NC_004685.1 + 60040 0.68 0.595467
Target:  5'- gGGGGugGCGUC-GCCCUucGGGGUGg- -3'
miRNA:   3'- -UCUCugCGCAGaUGGGGu-UCUCGCgu -5'
19263 3' -56.4 NC_004685.1 + 28681 0.68 0.552777
Target:  5'- --cGAuCGCGUCggcgacGCCaCCAGGAGUGCGc -3'
miRNA:   3'- ucuCU-GCGCAGa-----UGG-GGUUCUCGCGU- -5'
19263 3' -56.4 NC_004685.1 + 57691 0.71 0.432011
Target:  5'- cGAGA-GCaUCUGCCCCAcgucGAGCGCc -3'
miRNA:   3'- uCUCUgCGcAGAUGGGGUu---CUCGCGu -5'
19263 3' -56.4 NC_004685.1 + 45950 0.73 0.328083
Target:  5'- cGGAGuAgGCGUCUuccaGCCCCAGuGGCGCu -3'
miRNA:   3'- -UCUC-UgCGCAGA----UGGGGUUcUCGCGu -5'
19263 3' -56.4 NC_004685.1 + 10620 0.76 0.203523
Target:  5'- cGGAGGCGCGggcCUACaaccugaagcugCCCAAGGGUGCGa -3'
miRNA:   3'- -UCUCUGCGCa--GAUG------------GGGUUCUCGCGU- -5'
19263 3' -56.4 NC_004685.1 + 2401 0.77 0.188088
Target:  5'- --cGACGCG-CUGCCCgCAAGcAGCGCAa -3'
miRNA:   3'- ucuCUGCGCaGAUGGG-GUUC-UCGCGU- -5'
19263 3' -56.4 NC_004685.1 + 69558 1.09 0.001022
Target:  5'- gAGAGACGCGUCUACCCCAAGAGCGCAg -3'
miRNA:   3'- -UCUCUGCGCAGAUGGGGUUCUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.