miRNA display CGI


Results 61 - 80 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 5' -62.8 NC_004685.1 + 23571 0.68 0.303687
Target:  5'- aUUCAgcguauCGCCAGCAagggucgcGGCCCCCgcggucgauggaucuGGCACCa -3'
miRNA:   3'- -AGGU------GCGGUUGU--------CCGGGGG---------------CCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 37717 0.68 0.307939
Target:  5'- gUCguCGCCGACggcacgaugaAGGCgcugcugggcaUCCCGGCugCCg -3'
miRNA:   3'- -AGguGCGGUUG----------UCCG-----------GGGGCCGugGG- -5'
19263 5' -62.8 NC_004685.1 + 66381 0.68 0.300179
Target:  5'- gCCGuCGUCGACGaugcgcacacggcGGCCCgaCGGCACCa -3'
miRNA:   3'- aGGU-GCGGUUGU-------------CCGGGg-GCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 66931 0.68 0.315125
Target:  5'- gUCACGUCAGCGuuGGUCgCgGGCAgCCCg -3'
miRNA:   3'- aGGUGCGGUUGU--CCGGgGgCCGU-GGG- -5'
19263 5' -62.8 NC_004685.1 + 36378 0.68 0.315125
Target:  5'- gCCGCGCCcGACGGcGgCCUgGGCAacuucCCCg -3'
miRNA:   3'- aGGUGCGG-UUGUC-CgGGGgCCGU-----GGG- -5'
19263 5' -62.8 NC_004685.1 + 30653 0.68 0.315125
Target:  5'- cCCG-GCCGAUuGGCaguccacgCCCGGCACCUu -3'
miRNA:   3'- aGGUgCGGUUGuCCGg-------GGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 58962 0.68 0.3217
Target:  5'- gUCCA-GCCGcaccACcGGCCaguuccaCUCGGCGCCCa -3'
miRNA:   3'- -AGGUgCGGU----UGuCCGG-------GGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 48405 0.68 0.322437
Target:  5'- gCCGCGCCcacCAGGgCCUCGGU-CUCg -3'
miRNA:   3'- aGGUGCGGuu-GUCCgGGGGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 46989 0.68 0.32023
Target:  5'- gUCCACGCCGaccgcggugACAaccuccucgacaguGGCCCCgCGGaaCGCCg -3'
miRNA:   3'- -AGGUGCGGU---------UGU--------------CCGGGG-GCC--GUGGg -5'
19263 5' -62.8 NC_004685.1 + 51890 0.68 0.293944
Target:  5'- cCCGCcugaCCAGCAccguGGCCUgagCGGCACCCu -3'
miRNA:   3'- aGGUGc---GGUUGU----CCGGGg--GCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 57667 0.68 0.293944
Target:  5'- cUUCACGUCGGCGuuGGCgUCCGGCgagagcaucuGCCCc -3'
miRNA:   3'- -AGGUGCGGUUGU--CCGgGGGCCG----------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 61897 0.68 0.293944
Target:  5'- cCCGagUGCC-ACAGGCCgUCGcGCACCg -3'
miRNA:   3'- aGGU--GCGGuUGUCCGGgGGC-CGUGGg -5'
19263 5' -62.8 NC_004685.1 + 64689 0.68 0.287134
Target:  5'- aCCAuCGCCucCAGcgaccacugcuuGCUCCaCGGCGCCCc -3'
miRNA:   3'- aGGU-GCGGuuGUC------------CGGGG-GCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 56102 0.68 0.285116
Target:  5'- aUCCACGgCAacagcuuggACAGGuCCCgCCGGUcguucggguugcggACCCu -3'
miRNA:   3'- -AGGUGCgGU---------UGUCC-GGG-GGCCG--------------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 35169 0.68 0.307227
Target:  5'- cUCCA-GCCGAgcCAGGCguucuggCUCCGGCuCCCa -3'
miRNA:   3'- -AGGUgCGGUU--GUCCG-------GGGGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 20770 0.68 0.303687
Target:  5'- gUCgACGCCGcuaucucggcgaugcGCGGcaGCCCCguCGGCACCg -3'
miRNA:   3'- -AGgUGCGGU---------------UGUC--CGGGG--GCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 21895 0.68 0.315125
Target:  5'- gUCCAa-CUGACGGGCCUUgGGCuuacGCCCg -3'
miRNA:   3'- -AGGUgcGGUUGUCCGGGGgCCG----UGGG- -5'
19263 5' -62.8 NC_004685.1 + 22062 0.68 0.315125
Target:  5'- aCCaACGCCgAGCAcGGCCCaCUGGgAgCCg -3'
miRNA:   3'- aGG-UGCGG-UUGU-CCGGG-GGCCgUgGG- -5'
19263 5' -62.8 NC_004685.1 + 43878 0.68 0.315125
Target:  5'- gCgGCGCUGACcGGCCCaCCGccGCuGCCCg -3'
miRNA:   3'- aGgUGCGGUUGuCCGGG-GGC--CG-UGGG- -5'
19263 5' -62.8 NC_004685.1 + 29177 0.68 0.315125
Target:  5'- gUCCggccaggaACGCCAGCGGGCCgagCaGCGCCUg -3'
miRNA:   3'- -AGG--------UGCGGUUGUCCGGgg-GcCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.