miRNA display CGI


Results 81 - 100 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 5' -62.8 NC_004685.1 + 36378 0.68 0.315125
Target:  5'- gCCGCGCCcGACGGcGgCCUgGGCAacuucCCCg -3'
miRNA:   3'- aGGUGCGG-UUGUC-CgGGGgCCGU-----GGG- -5'
19263 5' -62.8 NC_004685.1 + 8562 0.69 0.254946
Target:  5'- gUCUGCGCCuguuuCGGguGCCgCCCGGCACgCu -3'
miRNA:   3'- -AGGUGCGGuu---GUC--CGG-GGGCCGUGgG- -5'
19263 5' -62.8 NC_004685.1 + 43088 0.69 0.28045
Target:  5'- gUCgGcCGCCGACuuGCCgCCGGCGCgCa -3'
miRNA:   3'- -AGgU-GCGGUUGucCGGgGGCCGUGgG- -5'
19263 5' -62.8 NC_004685.1 + 34131 0.69 0.28045
Target:  5'- -gCGCGaUCAGCAGuGCCCaCGGC-CCCa -3'
miRNA:   3'- agGUGC-GGUUGUC-CGGGgGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 39231 0.69 0.28045
Target:  5'- uUCgGCGCCGgcugggggACGGGCUugCCCaGCGCCUc -3'
miRNA:   3'- -AGgUGCGGU--------UGUCCGG--GGGcCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 39393 0.69 0.27781
Target:  5'- aCCGCGCCGG-AGGCCagguugucguaggUCGGCGCCg -3'
miRNA:   3'- aGGUGCGGUUgUCCGGg------------GGCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 50643 0.69 0.273889
Target:  5'- aCCACGCagugCGAguGGCCCUCcgacagGGCAgCCa -3'
miRNA:   3'- aGGUGCG----GUUguCCGGGGG------CCGUgGG- -5'
19263 5' -62.8 NC_004685.1 + 22266 0.69 0.28045
Target:  5'- gUCCaagguGCGCUggucggcgGGCGGGCCuCCCGGUucgucgucgcGCCCc -3'
miRNA:   3'- -AGG-----UGCGG--------UUGUCCGG-GGGCCG----------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 54498 0.69 0.273889
Target:  5'- gCCACGCCGACuucgaugucuGCgCCUCGaucGCACCCa -3'
miRNA:   3'- aGGUGCGGUUGuc--------CG-GGGGC---CGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 61565 0.69 0.267452
Target:  5'- aCCGgGCCAGCAcuuccGGCUCCaGGaaCACCCg -3'
miRNA:   3'- aGGUgCGGUUGU-----CCGGGGgCC--GUGGG- -5'
19263 5' -62.8 NC_004685.1 + 69520 0.69 0.260513
Target:  5'- gCCGCGCaa--GGGCaagccgagcagcuCCCCGGcCACCCc -3'
miRNA:   3'- aGGUGCGguugUCCG-------------GGGGCC-GUGGG- -5'
19263 5' -62.8 NC_004685.1 + 19402 0.69 0.248875
Target:  5'- aUCACGaCGACGGGCCaagCCUGGUGuCCCg -3'
miRNA:   3'- aGGUGCgGUUGUCCGG---GGGCCGU-GGG- -5'
19263 5' -62.8 NC_004685.1 + 66808 0.69 0.248875
Target:  5'- aUCCugGCCAGCGccGuGCgCaCCGGCcgcaaGCCCa -3'
miRNA:   3'- -AGGugCGGUUGU--C-CGgG-GGCCG-----UGGG- -5'
19263 5' -62.8 NC_004685.1 + 63252 0.69 0.254946
Target:  5'- gUUCGgGCCAGguGauGCCCuuGGCGCCg -3'
miRNA:   3'- -AGGUgCGGUUguC--CGGGggCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 19355 0.69 0.254946
Target:  5'- gCCGCGgCGAagucGG-CCCCGGCAgCCCg -3'
miRNA:   3'- aGGUGCgGUUgu--CCgGGGGCCGU-GGG- -5'
19263 5' -62.8 NC_004685.1 + 53145 0.7 0.225779
Target:  5'- cUCCACGUCgAGCAcGCCCagCCGGUugcGCCCc -3'
miRNA:   3'- -AGGUGCGG-UUGUcCGGG--GGCCG---UGGG- -5'
19263 5' -62.8 NC_004685.1 + 29200 0.7 0.242924
Target:  5'- gCCGCG-CAACAGGCCgcgcugauguUCCaGCACCUg -3'
miRNA:   3'- aGGUGCgGUUGUCCGG----------GGGcCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 24756 0.7 0.214927
Target:  5'- cUCCgACGgCAACucgaucgucgAGGaCCCCGGCACCg -3'
miRNA:   3'- -AGG-UGCgGUUG----------UCCgGGGGCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 39684 0.7 0.237091
Target:  5'- aCCAUGCCGAuCAGGUcgCCaCCGGCGucgaCCg -3'
miRNA:   3'- aGGUGCGGUU-GUCCG--GG-GGCCGUg---GG- -5'
19263 5' -62.8 NC_004685.1 + 68472 0.7 0.231377
Target:  5'- gCCGCcaguCCGAUGcGGCCCCCuGGC-CCCg -3'
miRNA:   3'- aGGUGc---GGUUGU-CCGGGGG-CCGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.