miRNA display CGI


Results 41 - 60 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 5' -62.8 NC_004685.1 + 50643 0.69 0.273889
Target:  5'- aCCACGCagugCGAguGGCCCUCcgacagGGCAgCCa -3'
miRNA:   3'- aGGUGCG----GUUguCCGGGGG------CCGUgGG- -5'
19263 5' -62.8 NC_004685.1 + 39393 0.69 0.27781
Target:  5'- aCCGCGCCGG-AGGCCagguugucguaggUCGGCGCCg -3'
miRNA:   3'- aGGUGCGGUUgUCCGGg------------GGCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 34131 0.69 0.28045
Target:  5'- -gCGCGaUCAGCAGuGCCCaCGGC-CCCa -3'
miRNA:   3'- agGUGC-GGUUGUC-CGGGgGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 43088 0.69 0.28045
Target:  5'- gUCgGcCGCCGACuuGCCgCCGGCGCgCa -3'
miRNA:   3'- -AGgU-GCGGUUGucCGGgGGCCGUGgG- -5'
19263 5' -62.8 NC_004685.1 + 19402 0.69 0.248875
Target:  5'- aUCACGaCGACGGGCCaagCCUGGUGuCCCg -3'
miRNA:   3'- aGGUGCgGUUGUCCGG---GGGCCGU-GGG- -5'
19263 5' -62.8 NC_004685.1 + 63252 0.69 0.254946
Target:  5'- gUUCGgGCCAGguGauGCCCuuGGCGCCg -3'
miRNA:   3'- -AGGUgCGGUUguC--CGGGggCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 8562 0.69 0.254946
Target:  5'- gUCUGCGCCuguuuCGGguGCCgCCCGGCACgCu -3'
miRNA:   3'- -AGGUGCGGuu---GUC--CGG-GGGCCGUGgG- -5'
19263 5' -62.8 NC_004685.1 + 69520 0.69 0.260513
Target:  5'- gCCGCGCaa--GGGCaagccgagcagcuCCCCGGcCACCCc -3'
miRNA:   3'- aGGUGCGguugUCCG-------------GGGGCC-GUGGG- -5'
19263 5' -62.8 NC_004685.1 + 61565 0.69 0.267452
Target:  5'- aCCGgGCCAGCAcuuccGGCUCCaGGaaCACCCg -3'
miRNA:   3'- aGGUgCGGUUGU-----CCGGGGgCC--GUGGG- -5'
19263 5' -62.8 NC_004685.1 + 54498 0.69 0.273889
Target:  5'- gCCACGCCGACuucgaugucuGCgCCUCGaucGCACCCa -3'
miRNA:   3'- aGGUGCGGUUGuc--------CG-GGGGC---CGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 22266 0.69 0.28045
Target:  5'- gUCCaagguGCGCUggucggcgGGCGGGCCuCCCGGUucgucgucgcGCCCc -3'
miRNA:   3'- -AGG-----UGCGG--------UUGUCCGG-GGGCCG----------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 46989 0.68 0.32023
Target:  5'- gUCCACGCCGaccgcggugACAaccuccucgacaguGGCCCCgCGGaaCGCCg -3'
miRNA:   3'- -AGGUGCGGU---------UGU--------------CCGGGG-GCC--GUGGg -5'
19263 5' -62.8 NC_004685.1 + 64689 0.68 0.287134
Target:  5'- aCCAuCGCCucCAGcgaccacugcuuGCUCCaCGGCGCCCc -3'
miRNA:   3'- aGGU-GCGGuuGUC------------CGGGG-GCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 61897 0.68 0.293944
Target:  5'- cCCGagUGCC-ACAGGCCgUCGcGCACCg -3'
miRNA:   3'- aGGU--GCGGuUGUCCGGgGGC-CGUGGg -5'
19263 5' -62.8 NC_004685.1 + 57667 0.68 0.293944
Target:  5'- cUUCACGUCGGCGuuGGCgUCCGGCgagagcaucuGCCCc -3'
miRNA:   3'- -AGGUGCGGUUGU--CCGgGGGCCG----------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 51890 0.68 0.293944
Target:  5'- cCCGCcugaCCAGCAccguGGCCUgagCGGCACCCu -3'
miRNA:   3'- aGGUGc---GGUUGU----CCGGGg--GCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 59222 0.68 0.287134
Target:  5'- gCCGCGgucCCGAUAGGCCaCCCGcugugucaGCuCCCg -3'
miRNA:   3'- aGGUGC---GGUUGUCCGG-GGGC--------CGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 35169 0.68 0.307227
Target:  5'- cUCCA-GCCGAgcCAGGCguucuggCUCCGGCuCCCa -3'
miRNA:   3'- -AGGUgCGGUU--GUCCG-------GGGGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 66381 0.68 0.300179
Target:  5'- gCCGuCGUCGACGaugcgcacacggcGGCCCgaCGGCACCa -3'
miRNA:   3'- aGGU-GCGGUUGU-------------CCGGGg-GCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 48405 0.68 0.322437
Target:  5'- gCCGCGCCcacCAGGgCCUCGGU-CUCg -3'
miRNA:   3'- aGGUGCGGuu-GUCCgGGGGCCGuGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.