Results 61 - 80 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
19263 | 5' | -62.8 | NC_004685.1 | + | 23571 | 0.68 | 0.303687 |
Target: 5'- aUUCAgcguauCGCCAGCAagggucgcGGCCCCCgcggucgauggaucuGGCACCa -3' miRNA: 3'- -AGGU------GCGGUUGU--------CCGGGGG---------------CCGUGGg -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 35169 | 0.68 | 0.307227 |
Target: 5'- cUCCA-GCCGAgcCAGGCguucuggCUCCGGCuCCCa -3' miRNA: 3'- -AGGUgCGGUU--GUCCG-------GGGGCCGuGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 37717 | 0.68 | 0.307939 |
Target: 5'- gUCguCGCCGACggcacgaugaAGGCgcugcugggcaUCCCGGCugCCg -3' miRNA: 3'- -AGguGCGGUUG----------UCCG-----------GGGGCCGugGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 43878 | 0.68 | 0.315125 |
Target: 5'- gCgGCGCUGACcGGCCCaCCGccGCuGCCCg -3' miRNA: 3'- aGgUGCGGUUGuCCGGG-GGC--CG-UGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 36378 | 0.68 | 0.315125 |
Target: 5'- gCCGCGCCcGACGGcGgCCUgGGCAacuucCCCg -3' miRNA: 3'- aGGUGCGG-UUGUC-CgGGGgCCGU-----GGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 66931 | 0.68 | 0.315125 |
Target: 5'- gUCACGUCAGCGuuGGUCgCgGGCAgCCCg -3' miRNA: 3'- aGGUGCGGUUGU--CCGGgGgCCGU-GGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 30653 | 0.68 | 0.315125 |
Target: 5'- cCCG-GCCGAUuGGCaguccacgCCCGGCACCUu -3' miRNA: 3'- aGGUgCGGUUGuCCGg-------GGGCCGUGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 21895 | 0.68 | 0.315125 |
Target: 5'- gUCCAa-CUGACGGGCCUUgGGCuuacGCCCg -3' miRNA: 3'- -AGGUgcGGUUGUCCGGGGgCCG----UGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 22062 | 0.68 | 0.315125 |
Target: 5'- aCCaACGCCgAGCAcGGCCCaCUGGgAgCCg -3' miRNA: 3'- aGG-UGCGG-UUGU-CCGGG-GGCCgUgGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 29177 | 0.68 | 0.315125 |
Target: 5'- gUCCggccaggaACGCCAGCGGGCCgagCaGCGCCUg -3' miRNA: 3'- -AGG--------UGCGGUUGUCCGGgg-GcCGUGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 46989 | 0.68 | 0.32023 |
Target: 5'- gUCCACGCCGaccgcggugACAaccuccucgacaguGGCCCCgCGGaaCGCCg -3' miRNA: 3'- -AGGUGCGGU---------UGU--------------CCGGGG-GCC--GUGGg -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 58962 | 0.68 | 0.3217 |
Target: 5'- gUCCA-GCCGcaccACcGGCCaguuccaCUCGGCGCCCa -3' miRNA: 3'- -AGGUgCGGU----UGuCCGG-------GGGCCGUGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 48405 | 0.68 | 0.322437 |
Target: 5'- gCCGCGCCcacCAGGgCCUCGGU-CUCg -3' miRNA: 3'- aGGUGCGGuu-GUCCgGGGGCCGuGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 23001 | 0.68 | 0.322437 |
Target: 5'- aUCGcCGCCGAUAGGCCCggUgGGaugcCACCCg -3' miRNA: 3'- aGGU-GCGGUUGUCCGGG--GgCC----GUGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 54915 | 0.68 | 0.322437 |
Target: 5'- gCCACGUCGGCuuggcuGaGCCgCUGGUACUCg -3' miRNA: 3'- aGGUGCGGUUGu-----C-CGGgGGCCGUGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 65959 | 0.67 | 0.329126 |
Target: 5'- ---uCGCCAACuggcGGCCCauuguguCgGGCACCCg -3' miRNA: 3'- agguGCGGUUGu---CCGGG-------GgCCGUGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 44239 | 0.67 | 0.329875 |
Target: 5'- --aGCGCCGcaGCAgcccGGCCCgaucUUGGCGCCCg -3' miRNA: 3'- aggUGCGGU--UGU----CCGGG----GGCCGUGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 9960 | 0.67 | 0.329875 |
Target: 5'- aUCCGCGgCGACGuGGacuaCCCG-CACCCg -3' miRNA: 3'- -AGGUGCgGUUGU-CCgg--GGGCcGUGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 50310 | 0.67 | 0.329875 |
Target: 5'- aCCAgCGaCgGAUggguguAGGCCaCCCGGUGCCCc -3' miRNA: 3'- aGGU-GC-GgUUG------UCCGG-GGGCCGUGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 62995 | 0.67 | 0.329875 |
Target: 5'- gCCGC-CCAccuCGGGCuCCuuGGC-CCCg -3' miRNA: 3'- aGGUGcGGUu--GUCCG-GGggCCGuGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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