miRNA display CGI


Results 101 - 120 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 5' -62.8 NC_004685.1 + 19808 0.67 0.377129
Target:  5'- cCCGCGaCCGcugcGCuGGaaaUCCCGGCcCCCa -3'
miRNA:   3'- aGGUGC-GGU----UGuCCg--GGGGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 51364 0.67 0.377129
Target:  5'- aUCCcUGCgCGACAGGgCCaCCuGCACCg -3'
miRNA:   3'- -AGGuGCG-GUUGUCCgGG-GGcCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 59537 0.67 0.377129
Target:  5'- -gUACGCCAGCuu-CUCCCGGCagaacagggcguGCCCg -3'
miRNA:   3'- agGUGCGGUUGuccGGGGGCCG------------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 51656 0.66 0.385435
Target:  5'- aCCAUGaacugCGGCAGcGCCUcgUCGGUGCCCg -3'
miRNA:   3'- aGGUGCg----GUUGUC-CGGG--GGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 30998 0.66 0.385435
Target:  5'- gCCGgGUgAGCuGGUCCCCuccaGGaCGCCCa -3'
miRNA:   3'- aGGUgCGgUUGuCCGGGGG----CC-GUGGG- -5'
19263 5' -62.8 NC_004685.1 + 10138 0.66 0.385435
Target:  5'- gCUGCGacCCGACGGGCUggcaGGCACCCc -3'
miRNA:   3'- aGGUGC--GGUUGUCCGGggg-CCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 6933 0.66 0.393013
Target:  5'- gCCucaGCCcACcguGGCCCCCGaGCcggucaaGCCCg -3'
miRNA:   3'- aGGug-CGGuUGu--CCGGGGGC-CG-------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 42794 0.66 0.393013
Target:  5'- aUCCGucgguguCGUgGACccuGGCUCCCGGCcaggucGCCCu -3'
miRNA:   3'- -AGGU-------GCGgUUGu--CCGGGGGCCG------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 15595 0.66 0.393861
Target:  5'- gCCcCGUCGACuacaaCCCCGGCgACCCu -3'
miRNA:   3'- aGGuGCGGUUGuccg-GGGGCCG-UGGG- -5'
19263 5' -62.8 NC_004685.1 + 33078 0.66 0.393861
Target:  5'- cCCGCGgCGAgcgcacccgcCAGGUCCUCGGCgucgGCCa -3'
miRNA:   3'- aGGUGCgGUU----------GUCCGGGGGCCG----UGGg -5'
19263 5' -62.8 NC_004685.1 + 31419 0.66 0.393861
Target:  5'- aCCGCguGCCcuACGGuuuGCCgCCCGGUACCg -3'
miRNA:   3'- aGGUG--CGGu-UGUC---CGG-GGGCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 49662 0.66 0.393861
Target:  5'- aUCCGCcCCGGCGGGUCgCCCGacucGCGCa- -3'
miRNA:   3'- -AGGUGcGGUUGUCCGG-GGGC----CGUGgg -5'
19263 5' -62.8 NC_004685.1 + 10944 0.66 0.393861
Target:  5'- aCCGCGCCgGGCAGGCgUUcgucaugaugaCGGCcacgACCCg -3'
miRNA:   3'- aGGUGCGG-UUGUCCGgGG-----------GCCG----UGGG- -5'
19263 5' -62.8 NC_004685.1 + 50244 0.66 0.393861
Target:  5'- -aCGCGCCAcGCAcGGCgUUCGGCGCgCu -3'
miRNA:   3'- agGUGCGGU-UGU-CCGgGGGCCGUGgG- -5'
19263 5' -62.8 NC_004685.1 + 66214 0.66 0.393861
Target:  5'- aCgACGCCAACAagggcuGCCCUCaGuGCAUCCg -3'
miRNA:   3'- aGgUGCGGUUGUc-----CGGGGG-C-CGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 52316 0.66 0.393861
Target:  5'- gCCggACGCCGuaguaGCGGGCCaguugCCG-CGCCCg -3'
miRNA:   3'- aGG--UGCGGU-----UGUCCGGg----GGCcGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 44112 0.66 0.397265
Target:  5'- gCCACaaggaguggGCCGGCGcGGCgcagggcaaaugggaCCCCGGCAaCCUg -3'
miRNA:   3'- aGGUG---------CGGUUGU-CCG---------------GGGGCCGU-GGG- -5'
19263 5' -62.8 NC_004685.1 + 24490 0.66 0.402406
Target:  5'- gCCGCGgCGuACAGGUCgCCGGCguGCgCg -3'
miRNA:   3'- aGGUGCgGU-UGUCCGGgGGCCG--UGgG- -5'
19263 5' -62.8 NC_004685.1 + 33412 0.66 0.402406
Target:  5'- gCCGCGCC-GCAGcGCa-CCGGCcuGCUCg -3'
miRNA:   3'- aGGUGCGGuUGUC-CGggGGCCG--UGGG- -5'
19263 5' -62.8 NC_004685.1 + 38232 0.66 0.402406
Target:  5'- gUCgGCGUCcuC-GG-CCCCGGCACCa -3'
miRNA:   3'- -AGgUGCGGuuGuCCgGGGGCCGUGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.