miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 5' -62.8 NC_004685.1 + 29177 0.68 0.315125
Target:  5'- gUCCggccaggaACGCCAGCGGGCCgagCaGCGCCUg -3'
miRNA:   3'- -AGG--------UGCGGUUGUCCGGgg-GcCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 29200 0.7 0.242924
Target:  5'- gCCGCG-CAACAGGCCgcgcugauguUCCaGCACCUg -3'
miRNA:   3'- aGGUGCgGUUGUCCGG----------GGGcCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 29447 0.67 0.376305
Target:  5'- aCUugGCCGAgGGGUUCC-GGCagcuggaGCCCg -3'
miRNA:   3'- aGGugCGGUUgUCCGGGGgCCG-------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 30298 0.76 0.080216
Target:  5'- aCCugGCCuccgGCGcGGUUCCCGGCACCa -3'
miRNA:   3'- aGGugCGGu---UGU-CCGGGGGCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 30399 0.67 0.352943
Target:  5'- gCCGCGaCCAACGGGCgggCCgaacaCGGCgaggcguuGCCCg -3'
miRNA:   3'- aGGUGC-GGUUGUCCG---GGg----GCCG--------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 30653 0.68 0.315125
Target:  5'- cCCG-GCCGAUuGGCaguccacgCCCGGCACCUu -3'
miRNA:   3'- aGGUgCGGUUGuCCGg-------GGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 30998 0.66 0.385435
Target:  5'- gCCGgGUgAGCuGGUCCCCuccaGGaCGCCCa -3'
miRNA:   3'- aGGUgCGgUUGuCCGGGGG----CC-GUGGG- -5'
19263 5' -62.8 NC_004685.1 + 31094 0.67 0.358487
Target:  5'- cUCgACGCCGACuucggcaucagcaaGGGCCUCgcaGGCAUCg -3'
miRNA:   3'- -AGgUGCGGUUG--------------UCCGGGGg--CCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 31419 0.66 0.393861
Target:  5'- aCCGCguGCCcuACGGuuuGCCgCCCGGUACCg -3'
miRNA:   3'- aGGUG--CGGu-UGUC---CGG-GGGCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 31727 0.73 0.15091
Target:  5'- aUCCACGCCuuCGGGCaCCguguaggugCCGGCcagcuccgaccACCCg -3'
miRNA:   3'- -AGGUGCGGuuGUCCG-GG---------GGCCG-----------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 32080 0.74 0.116341
Target:  5'- aCCG-GCgGGCAGGuuCCCCCGGgCACCCc -3'
miRNA:   3'- aGGUgCGgUUGUCC--GGGGGCC-GUGGG- -5'
19263 5' -62.8 NC_004685.1 + 32288 0.66 0.427839
Target:  5'- gUCCugGUggcgcggcgaccgCAGC-GGCCCUgcagauCGGCAUCCa -3'
miRNA:   3'- -AGGugCG-------------GUUGuCCGGGG------GCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 33078 0.66 0.393861
Target:  5'- cCCGCGgCGAgcgcacccgcCAGGUCCUCGGCgucgGCCa -3'
miRNA:   3'- aGGUGCgGUU----------GUCCGGGGGCCG----UGGg -5'
19263 5' -62.8 NC_004685.1 + 33129 0.7 0.225779
Target:  5'- cCCGCGUCGcCGGGCgCgCCGGUgugcagGCCCa -3'
miRNA:   3'- aGGUGCGGUuGUCCGgG-GGCCG------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 33412 0.66 0.402406
Target:  5'- gCCGCGCC-GCAGcGCa-CCGGCcuGCUCg -3'
miRNA:   3'- aGGUGCGGuUGUC-CGggGGCCG--UGGG- -5'
19263 5' -62.8 NC_004685.1 + 34131 0.69 0.28045
Target:  5'- -gCGCGaUCAGCAGuGCCCaCGGC-CCCa -3'
miRNA:   3'- agGUGC-GGUUGUC-CGGGgGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 34365 0.66 0.419844
Target:  5'- aUCC-CGCCGAa--GCCUgCGGCuggACCCg -3'
miRNA:   3'- -AGGuGCGGUUgucCGGGgGCCG---UGGG- -5'
19263 5' -62.8 NC_004685.1 + 34429 0.67 0.337439
Target:  5'- gUgACGCgGACAcgcguguuguGGCCgCgGGCACCCc -3'
miRNA:   3'- aGgUGCGgUUGU----------CCGGgGgCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 34979 0.66 0.419844
Target:  5'- cCCACGCCAucuacaucgGCGGGCUgU--GCACCUg -3'
miRNA:   3'- aGGUGCGGU---------UGUCCGGgGgcCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 35169 0.68 0.307227
Target:  5'- cUCCA-GCCGAgcCAGGCguucuggCUCCGGCuCCCa -3'
miRNA:   3'- -AGGUgCGGUU--GUCCG-------GGGGCCGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.