miRNA display CGI


Results 61 - 80 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 5' -62.8 NC_004685.1 + 36378 0.68 0.315125
Target:  5'- gCCGCGCCcGACGGcGgCCUgGGCAacuucCCCg -3'
miRNA:   3'- aGGUGCGG-UUGUC-CgGGGgCCGU-----GGG- -5'
19263 5' -62.8 NC_004685.1 + 37009 0.66 0.411067
Target:  5'- gUCCugGCU----GGCCCCgCGGUugUCc -3'
miRNA:   3'- -AGGugCGGuuguCCGGGG-GCCGugGG- -5'
19263 5' -62.8 NC_004685.1 + 37406 0.73 0.147071
Target:  5'- gCCGCGCCAcCAGGaCCgCCC-GCGCCa -3'
miRNA:   3'- aGGUGCGGUuGUCC-GG-GGGcCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 37717 0.68 0.307939
Target:  5'- gUCguCGCCGACggcacgaugaAGGCgcugcugggcaUCCCGGCugCCg -3'
miRNA:   3'- -AGguGCGGUUG----------UCCG-----------GGGGCCGugGG- -5'
19263 5' -62.8 NC_004685.1 + 37920 0.72 0.1715
Target:  5'- gUCCAC-CCAGCGGGCggguggucggagCUggCCGGCACCUa -3'
miRNA:   3'- -AGGUGcGGUUGUCCG------------GG--GGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 38232 0.66 0.402406
Target:  5'- gUCgGCGUCcuC-GG-CCCCGGCACCa -3'
miRNA:   3'- -AGgUGCGGuuGuCCgGGGGCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 38443 0.7 0.214927
Target:  5'- gCCGCgauGCCGAcCAGGCCCgagCCGaCGCCCu -3'
miRNA:   3'- aGGUG---CGGUU-GUCCGGG---GGCcGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 38847 0.76 0.084629
Target:  5'- gCCGCGCCGGuCGGuGCCCgCGGUgccACCCa -3'
miRNA:   3'- aGGUGCGGUU-GUC-CGGGgGCCG---UGGG- -5'
19263 5' -62.8 NC_004685.1 + 39093 0.67 0.368944
Target:  5'- -aCGCgGCCGACGGGUUCgCCGGguUCUa -3'
miRNA:   3'- agGUG-CGGUUGUCCGGG-GGCCguGGG- -5'
19263 5' -62.8 NC_004685.1 + 39231 0.69 0.28045
Target:  5'- uUCgGCGCCGgcugggggACGGGCUugCCCaGCGCCUc -3'
miRNA:   3'- -AGgUGCGGU--------UGUCCGG--GGGcCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 39393 0.69 0.27781
Target:  5'- aCCGCGCCGG-AGGCCagguugucguaggUCGGCGCCg -3'
miRNA:   3'- aGGUGCGGUUgUCCGGg------------GGCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 39684 0.7 0.237091
Target:  5'- aCCAUGCCGAuCAGGUcgCCaCCGGCGucgaCCg -3'
miRNA:   3'- aGGUGCGGUU-GUCCG--GG-GGCCGUg---GG- -5'
19263 5' -62.8 NC_004685.1 + 41556 0.66 0.428732
Target:  5'- aUCGCGUCGAC-GGCUgCggugGGCGCCCc -3'
miRNA:   3'- aGGUGCGGUUGuCCGGgGg---CCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 42269 0.67 0.368944
Target:  5'- cUCCGCGUCAugucGCAGGCCaCCUacgauGGUcucgGCUCg -3'
miRNA:   3'- -AGGUGCGGU----UGUCCGG-GGG-----CCG----UGGG- -5'
19263 5' -62.8 NC_004685.1 + 42794 0.66 0.393013
Target:  5'- aUCCGucgguguCGUgGACccuGGCUCCCGGCcaggucGCCCu -3'
miRNA:   3'- -AGGU-------GCGgUUGu--CCGGGGGCCG------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 43088 0.69 0.28045
Target:  5'- gUCgGcCGCCGACuuGCCgCCGGCGCgCa -3'
miRNA:   3'- -AGgU-GCGGUUGucCGGgGGCCGUGgG- -5'
19263 5' -62.8 NC_004685.1 + 43387 0.67 0.360882
Target:  5'- aCCGCuUCAACGGGgCCgCGGCGCa- -3'
miRNA:   3'- aGGUGcGGUUGUCCgGGgGCCGUGgg -5'
19263 5' -62.8 NC_004685.1 + 43878 0.68 0.315125
Target:  5'- gCgGCGCUGACcGGCCCaCCGccGCuGCCCg -3'
miRNA:   3'- aGgUGCGGUUGuCCGGG-GGC--CG-UGGG- -5'
19263 5' -62.8 NC_004685.1 + 44112 0.66 0.397265
Target:  5'- gCCACaaggaguggGCCGGCGcGGCgcagggcaaaugggaCCCCGGCAaCCUg -3'
miRNA:   3'- aGGUG---------CGGUUGU-CCG---------------GGGGCCGU-GGG- -5'
19263 5' -62.8 NC_004685.1 + 44239 0.67 0.329875
Target:  5'- --aGCGCCGcaGCAgcccGGCCCgaucUUGGCGCCCg -3'
miRNA:   3'- aggUGCGGU--UGU----CCGGG----GGCCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.