miRNA display CGI


Results 81 - 100 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 5' -62.8 NC_004685.1 + 46423 0.66 0.428732
Target:  5'- uUCUACGC--AguGGCCCC-GGUGCUCg -3'
miRNA:   3'- -AGGUGCGguUguCCGGGGgCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 46989 0.68 0.32023
Target:  5'- gUCCACGCCGaccgcggugACAaccuccucgacaguGGCCCCgCGGaaCGCCg -3'
miRNA:   3'- -AGGUGCGGU---------UGU--------------CCGGGG-GCC--GUGGg -5'
19263 5' -62.8 NC_004685.1 + 48141 0.73 0.15091
Target:  5'- cUCAUGCCGGCAccaCCCCGGCugGCCCg -3'
miRNA:   3'- aGGUGCGGUUGUccgGGGGCCG--UGGG- -5'
19263 5' -62.8 NC_004685.1 + 48405 0.68 0.322437
Target:  5'- gCCGCGCCcacCAGGgCCUCGGU-CUCg -3'
miRNA:   3'- aGGUGCGGuu-GUCCgGGGGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 48770 0.71 0.185029
Target:  5'- cCCAgcauguCGCCAAUcucgauGGGCUcaCCCGGCACCUu -3'
miRNA:   3'- aGGU------GCGGUUG------UCCGG--GGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 49625 0.67 0.368944
Target:  5'- --aACGCCAGguGGUCgaggaacgCCCGGUucACCCg -3'
miRNA:   3'- aggUGCGGUUguCCGG--------GGGCCG--UGGG- -5'
19263 5' -62.8 NC_004685.1 + 49662 0.66 0.393861
Target:  5'- aUCCGCcCCGGCGGGUCgCCCGacucGCGCa- -3'
miRNA:   3'- -AGGUGcGGUUGUCCGG-GGGC----CGUGgg -5'
19263 5' -62.8 NC_004685.1 + 50244 0.66 0.393861
Target:  5'- -aCGCGCCAcGCAcGGCgUUCGGCGCgCu -3'
miRNA:   3'- agGUGCGGU-UGU-CCGgGGGCCGUGgG- -5'
19263 5' -62.8 NC_004685.1 + 50310 0.67 0.329875
Target:  5'- aCCAgCGaCgGAUggguguAGGCCaCCCGGUGCCCc -3'
miRNA:   3'- aGGU-GC-GgUUG------UCCGG-GGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 50643 0.69 0.273889
Target:  5'- aCCACGCagugCGAguGGCCCUCcgacagGGCAgCCa -3'
miRNA:   3'- aGGUGCG----GUUguCCGGGGG------CCGUgGG- -5'
19263 5' -62.8 NC_004685.1 + 51364 0.67 0.377129
Target:  5'- aUCCcUGCgCGACAGGgCCaCCuGCACCg -3'
miRNA:   3'- -AGGuGCG-GUUGUCCgGG-GGcCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 51656 0.66 0.385435
Target:  5'- aCCAUGaacugCGGCAGcGCCUcgUCGGUGCCCg -3'
miRNA:   3'- aGGUGCg----GUUGUC-CGGG--GGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 51890 0.68 0.293944
Target:  5'- cCCGCcugaCCAGCAccguGGCCUgagCGGCACCCu -3'
miRNA:   3'- aGGUGc---GGUUGU----CCGGGg--GCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 52225 0.66 0.428732
Target:  5'- cUCgGCGUCGGCGGGCUUgC-GCGCCa -3'
miRNA:   3'- -AGgUGCGGUUGUCCGGGgGcCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 52316 0.66 0.393861
Target:  5'- gCCggACGCCGuaguaGCGGGCCaguugCCG-CGCCCg -3'
miRNA:   3'- aGG--UGCGGU-----UGUCCGGg----GGCcGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 53145 0.7 0.225779
Target:  5'- cUCCACGUCgAGCAcGCCCagCCGGUugcGCCCc -3'
miRNA:   3'- -AGGUGCGG-UUGUcCGGG--GGCCG---UGGG- -5'
19263 5' -62.8 NC_004685.1 + 53236 0.76 0.089273
Target:  5'- gUCGCGCCgGGCAGGCCUaccagaaacggCGGCACCCc -3'
miRNA:   3'- aGGUGCGG-UUGUCCGGGg----------GCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 54498 0.69 0.273889
Target:  5'- gCCACGCCGACuucgaugucuGCgCCUCGaucGCACCCa -3'
miRNA:   3'- aGGUGCGGUUGuc--------CG-GGGGC---CGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 54915 0.68 0.322437
Target:  5'- gCCACGUCGGCuuggcuGaGCCgCUGGUACUCg -3'
miRNA:   3'- aGGUGCGGUUGu-----C-CGGgGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 54927 0.67 0.368944
Target:  5'- cUCCAgGUCGauGCAGaaauacuCCUgCGGCACCCa -3'
miRNA:   3'- -AGGUgCGGU--UGUCc------GGGgGCCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.