Results 101 - 120 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19263 | 5' | -62.8 | NC_004685.1 | + | 55631 | 0.72 | 0.167191 |
Target: 5'- gCCGCGCUcGCGGGCgCCgaacaggaugCGGCugCCg -3' miRNA: 3'- aGGUGCGGuUGUCCGgGG----------GCCGugGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 55933 | 0.66 | 0.411067 |
Target: 5'- -gUACGCCAGCA-GCagCCCGGCGaugCCg -3' miRNA: 3'- agGUGCGGUUGUcCGg-GGGCCGUg--GG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 56102 | 0.68 | 0.285116 |
Target: 5'- aUCCACGgCAacagcuuggACAGGuCCCgCCGGUcguucggguugcggACCCu -3' miRNA: 3'- -AGGUGCgGU---------UGUCC-GGG-GGCCG--------------UGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 57667 | 0.68 | 0.293944 |
Target: 5'- cUUCACGUCGGCGuuGGCgUCCGGCgagagcaucuGCCCc -3' miRNA: 3'- -AGGUGCGGUUGU--CCGgGGGCCG----------UGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 58308 | 0.67 | 0.345129 |
Target: 5'- aUUCGCGCCA----GCCUCCGGCgaguggucaccaGCCCu -3' miRNA: 3'- -AGGUGCGGUugucCGGGGGCCG------------UGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 58962 | 0.68 | 0.3217 |
Target: 5'- gUCCA-GCCGcaccACcGGCCaguuccaCUCGGCGCCCa -3' miRNA: 3'- -AGGUgCGGU----UGuCCGG-------GGGCCGUGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 59222 | 0.68 | 0.287134 |
Target: 5'- gCCGCGgucCCGAUAGGCCaCCCGcugugucaGCuCCCg -3' miRNA: 3'- aGGUGC---GGUUGUCCGG-GGGC--------CGuGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 59537 | 0.67 | 0.377129 |
Target: 5'- -gUACGCCAGCuu-CUCCCGGCagaacagggcguGCCCg -3' miRNA: 3'- agGUGCGGUUGuccGGGGGCCG------------UGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 59877 | 0.67 | 0.352943 |
Target: 5'- cCCGCG-CAGCGuGCCCUCaGCGCCa -3' miRNA: 3'- aGGUGCgGUUGUcCGGGGGcCGUGGg -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 60430 | 0.66 | 0.428732 |
Target: 5'- aUCACGCgGGguuuCGGcGgCCCCGGCgcugGCCCa -3' miRNA: 3'- aGGUGCGgUU----GUC-CgGGGGCCG----UGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 60703 | 0.75 | 0.107502 |
Target: 5'- uUCCACacCCGGCuGaCCCUCGGCGCCCa -3' miRNA: 3'- -AGGUGc-GGUUGuCcGGGGGCCGUGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 61565 | 0.69 | 0.267452 |
Target: 5'- aCCGgGCCAGCAcuuccGGCUCCaGGaaCACCCg -3' miRNA: 3'- aGGUgCGGUUGU-----CCGGGGgCC--GUGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 61897 | 0.68 | 0.293944 |
Target: 5'- cCCGagUGCC-ACAGGCCgUCGcGCACCg -3' miRNA: 3'- aGGU--GCGGuUGUCCGGgGGC-CGUGGg -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 62135 | 0.67 | 0.329875 |
Target: 5'- -gCugGCCAccagGCGGGCCaCCuGCACCg -3' miRNA: 3'- agGugCGGU----UGUCCGGgGGcCGUGGg -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 62353 | 0.71 | 0.198993 |
Target: 5'- uUCCACGCCGgggccaaacgguuGCAGGUCCU--GCACCg -3' miRNA: 3'- -AGGUGCGGU-------------UGUCCGGGGgcCGUGGg -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 62995 | 0.67 | 0.329875 |
Target: 5'- gCCGC-CCAccuCGGGCuCCuuGGC-CCCg -3' miRNA: 3'- aGGUGcGGUu--GUCCG-GGggCCGuGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 63252 | 0.69 | 0.254946 |
Target: 5'- gUUCGgGCCAGguGauGCCCuuGGCGCCg -3' miRNA: 3'- -AGGUgCGGUUguC--CGGGggCCGUGGg -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 64236 | 0.67 | 0.345129 |
Target: 5'- cCCGCGCCGgcccgcagauACAGGUccaCCCUGGCcagGCUg -3' miRNA: 3'- aGGUGCGGU----------UGUCCG---GGGGCCG---UGGg -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 64689 | 0.68 | 0.287134 |
Target: 5'- aCCAuCGCCucCAGcgaccacugcuuGCUCCaCGGCGCCCc -3' miRNA: 3'- aGGU-GCGGuuGUC------------CGGGG-GCCGUGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 65959 | 0.67 | 0.329126 |
Target: 5'- ---uCGCCAACuggcGGCCCauuguguCgGGCACCCg -3' miRNA: 3'- agguGCGGUUGu---CCGGG-------GgCCGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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