miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 5' -62.8 NC_004685.1 + 61565 0.69 0.267452
Target:  5'- aCCGgGCCAGCAcuuccGGCUCCaGGaaCACCCg -3'
miRNA:   3'- aGGUgCGGUUGU-----CCGGGGgCC--GUGGG- -5'
19263 5' -62.8 NC_004685.1 + 60703 0.75 0.107502
Target:  5'- uUCCACacCCGGCuGaCCCUCGGCGCCCa -3'
miRNA:   3'- -AGGUGc-GGUUGuCcGGGGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 60430 0.66 0.428732
Target:  5'- aUCACGCgGGguuuCGGcGgCCCCGGCgcugGCCCa -3'
miRNA:   3'- aGGUGCGgUU----GUC-CgGGGGCCG----UGGG- -5'
19263 5' -62.8 NC_004685.1 + 59877 0.67 0.352943
Target:  5'- cCCGCG-CAGCGuGCCCUCaGCGCCa -3'
miRNA:   3'- aGGUGCgGUUGUcCGGGGGcCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 59537 0.67 0.377129
Target:  5'- -gUACGCCAGCuu-CUCCCGGCagaacagggcguGCCCg -3'
miRNA:   3'- agGUGCGGUUGuccGGGGGCCG------------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 59222 0.68 0.287134
Target:  5'- gCCGCGgucCCGAUAGGCCaCCCGcugugucaGCuCCCg -3'
miRNA:   3'- aGGUGC---GGUUGUCCGG-GGGC--------CGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 58962 0.68 0.3217
Target:  5'- gUCCA-GCCGcaccACcGGCCaguuccaCUCGGCGCCCa -3'
miRNA:   3'- -AGGUgCGGU----UGuCCGG-------GGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 58308 0.67 0.345129
Target:  5'- aUUCGCGCCA----GCCUCCGGCgaguggucaccaGCCCu -3'
miRNA:   3'- -AGGUGCGGUugucCGGGGGCCG------------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 57667 0.68 0.293944
Target:  5'- cUUCACGUCGGCGuuGGCgUCCGGCgagagcaucuGCCCc -3'
miRNA:   3'- -AGGUGCGGUUGU--CCGgGGGCCG----------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 56102 0.68 0.285116
Target:  5'- aUCCACGgCAacagcuuggACAGGuCCCgCCGGUcguucggguugcggACCCu -3'
miRNA:   3'- -AGGUGCgGU---------UGUCC-GGG-GGCCG--------------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 55933 0.66 0.411067
Target:  5'- -gUACGCCAGCA-GCagCCCGGCGaugCCg -3'
miRNA:   3'- agGUGCGGUUGUcCGg-GGGCCGUg--GG- -5'
19263 5' -62.8 NC_004685.1 + 55631 0.72 0.167191
Target:  5'- gCCGCGCUcGCGGGCgCCgaacaggaugCGGCugCCg -3'
miRNA:   3'- aGGUGCGGuUGUCCGgGG----------GCCGugGG- -5'
19263 5' -62.8 NC_004685.1 + 54927 0.67 0.368944
Target:  5'- cUCCAgGUCGauGCAGaaauacuCCUgCGGCACCCa -3'
miRNA:   3'- -AGGUgCGGU--UGUCc------GGGgGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 54915 0.68 0.322437
Target:  5'- gCCACGUCGGCuuggcuGaGCCgCUGGUACUCg -3'
miRNA:   3'- aGGUGCGGUUGu-----C-CGGgGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 54498 0.69 0.273889
Target:  5'- gCCACGCCGACuucgaugucuGCgCCUCGaucGCACCCa -3'
miRNA:   3'- aGGUGCGGUUGuc--------CG-GGGGC---CGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 53236 0.76 0.089273
Target:  5'- gUCGCGCCgGGCAGGCCUaccagaaacggCGGCACCCc -3'
miRNA:   3'- aGGUGCGG-UUGUCCGGGg----------GCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 53145 0.7 0.225779
Target:  5'- cUCCACGUCgAGCAcGCCCagCCGGUugcGCCCc -3'
miRNA:   3'- -AGGUGCGG-UUGUcCGGG--GGCCG---UGGG- -5'
19263 5' -62.8 NC_004685.1 + 52316 0.66 0.393861
Target:  5'- gCCggACGCCGuaguaGCGGGCCaguugCCG-CGCCCg -3'
miRNA:   3'- aGG--UGCGGU-----UGUCCGGg----GGCcGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 52225 0.66 0.428732
Target:  5'- cUCgGCGUCGGCGGGCUUgC-GCGCCa -3'
miRNA:   3'- -AGgUGCGGUUGUCCGGGgGcCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 51890 0.68 0.293944
Target:  5'- cCCGCcugaCCAGCAccguGGCCUgagCGGCACCCu -3'
miRNA:   3'- aGGUGc---GGUUGU----CCGGGg--GCCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.