miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 5' -62.8 NC_004685.1 + 51656 0.66 0.385435
Target:  5'- aCCAUGaacugCGGCAGcGCCUcgUCGGUGCCCg -3'
miRNA:   3'- aGGUGCg----GUUGUC-CGGG--GGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 51364 0.67 0.377129
Target:  5'- aUCCcUGCgCGACAGGgCCaCCuGCACCg -3'
miRNA:   3'- -AGGuGCG-GUUGUCCgGG-GGcCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 50643 0.69 0.273889
Target:  5'- aCCACGCagugCGAguGGCCCUCcgacagGGCAgCCa -3'
miRNA:   3'- aGGUGCG----GUUguCCGGGGG------CCGUgGG- -5'
19263 5' -62.8 NC_004685.1 + 50310 0.67 0.329875
Target:  5'- aCCAgCGaCgGAUggguguAGGCCaCCCGGUGCCCc -3'
miRNA:   3'- aGGU-GC-GgUUG------UCCGG-GGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 50244 0.66 0.393861
Target:  5'- -aCGCGCCAcGCAcGGCgUUCGGCGCgCu -3'
miRNA:   3'- agGUGCGGU-UGU-CCGgGGGCCGUGgG- -5'
19263 5' -62.8 NC_004685.1 + 49662 0.66 0.393861
Target:  5'- aUCCGCcCCGGCGGGUCgCCCGacucGCGCa- -3'
miRNA:   3'- -AGGUGcGGUUGUCCGG-GGGC----CGUGgg -5'
19263 5' -62.8 NC_004685.1 + 49625 0.67 0.368944
Target:  5'- --aACGCCAGguGGUCgaggaacgCCCGGUucACCCg -3'
miRNA:   3'- aggUGCGGUUguCCGG--------GGGCCG--UGGG- -5'
19263 5' -62.8 NC_004685.1 + 48770 0.71 0.185029
Target:  5'- cCCAgcauguCGCCAAUcucgauGGGCUcaCCCGGCACCUu -3'
miRNA:   3'- aGGU------GCGGUUG------UCCGG--GGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 48405 0.68 0.322437
Target:  5'- gCCGCGCCcacCAGGgCCUCGGU-CUCg -3'
miRNA:   3'- aGGUGCGGuu-GUCCgGGGGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 48141 0.73 0.15091
Target:  5'- cUCAUGCCGGCAccaCCCCGGCugGCCCg -3'
miRNA:   3'- aGGUGCGGUUGUccgGGGGCCG--UGGG- -5'
19263 5' -62.8 NC_004685.1 + 46989 0.68 0.32023
Target:  5'- gUCCACGCCGaccgcggugACAaccuccucgacaguGGCCCCgCGGaaCGCCg -3'
miRNA:   3'- -AGGUGCGGU---------UGU--------------CCGGGG-GCC--GUGGg -5'
19263 5' -62.8 NC_004685.1 + 46423 0.66 0.428732
Target:  5'- uUCUACGC--AguGGCCCC-GGUGCUCg -3'
miRNA:   3'- -AGGUGCGguUguCCGGGGgCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 44239 0.67 0.329875
Target:  5'- --aGCGCCGcaGCAgcccGGCCCgaucUUGGCGCCCg -3'
miRNA:   3'- aggUGCGGU--UGU----CCGGG----GGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 44112 0.66 0.397265
Target:  5'- gCCACaaggaguggGCCGGCGcGGCgcagggcaaaugggaCCCCGGCAaCCUg -3'
miRNA:   3'- aGGUG---------CGGUUGU-CCG---------------GGGGCCGU-GGG- -5'
19263 5' -62.8 NC_004685.1 + 43878 0.68 0.315125
Target:  5'- gCgGCGCUGACcGGCCCaCCGccGCuGCCCg -3'
miRNA:   3'- aGgUGCGGUUGuCCGGG-GGC--CG-UGGG- -5'
19263 5' -62.8 NC_004685.1 + 43387 0.67 0.360882
Target:  5'- aCCGCuUCAACGGGgCCgCGGCGCa- -3'
miRNA:   3'- aGGUGcGGUUGUCCgGGgGCCGUGgg -5'
19263 5' -62.8 NC_004685.1 + 43088 0.69 0.28045
Target:  5'- gUCgGcCGCCGACuuGCCgCCGGCGCgCa -3'
miRNA:   3'- -AGgU-GCGGUUGucCGGgGGCCGUGgG- -5'
19263 5' -62.8 NC_004685.1 + 42794 0.66 0.393013
Target:  5'- aUCCGucgguguCGUgGACccuGGCUCCCGGCcaggucGCCCu -3'
miRNA:   3'- -AGGU-------GCGgUUGu--CCGGGGGCCG------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 42269 0.67 0.368944
Target:  5'- cUCCGCGUCAugucGCAGGCCaCCUacgauGGUcucgGCUCg -3'
miRNA:   3'- -AGGUGCGGU----UGUCCGG-GGG-----CCG----UGGG- -5'
19263 5' -62.8 NC_004685.1 + 41556 0.66 0.428732
Target:  5'- aUCGCGUCGAC-GGCUgCggugGGCGCCCc -3'
miRNA:   3'- aGGUGCGGUUGuCCGGgGg---CCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.