miRNA display CGI


Results 61 - 80 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 5' -62.8 NC_004685.1 + 39684 0.7 0.237091
Target:  5'- aCCAUGCCGAuCAGGUcgCCaCCGGCGucgaCCg -3'
miRNA:   3'- aGGUGCGGUU-GUCCG--GG-GGCCGUg---GG- -5'
19263 5' -62.8 NC_004685.1 + 39393 0.69 0.27781
Target:  5'- aCCGCGCCGG-AGGCCagguugucguaggUCGGCGCCg -3'
miRNA:   3'- aGGUGCGGUUgUCCGGg------------GGCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 39231 0.69 0.28045
Target:  5'- uUCgGCGCCGgcugggggACGGGCUugCCCaGCGCCUc -3'
miRNA:   3'- -AGgUGCGGU--------UGUCCGG--GGGcCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 39093 0.67 0.368944
Target:  5'- -aCGCgGCCGACGGGUUCgCCGGguUCUa -3'
miRNA:   3'- agGUG-CGGUUGUCCGGG-GGCCguGGG- -5'
19263 5' -62.8 NC_004685.1 + 38847 0.76 0.084629
Target:  5'- gCCGCGCCGGuCGGuGCCCgCGGUgccACCCa -3'
miRNA:   3'- aGGUGCGGUU-GUC-CGGGgGCCG---UGGG- -5'
19263 5' -62.8 NC_004685.1 + 38443 0.7 0.214927
Target:  5'- gCCGCgauGCCGAcCAGGCCCgagCCGaCGCCCu -3'
miRNA:   3'- aGGUG---CGGUU-GUCCGGG---GGCcGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 38232 0.66 0.402406
Target:  5'- gUCgGCGUCcuC-GG-CCCCGGCACCa -3'
miRNA:   3'- -AGgUGCGGuuGuCCgGGGGCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 37920 0.72 0.1715
Target:  5'- gUCCAC-CCAGCGGGCggguggucggagCUggCCGGCACCUa -3'
miRNA:   3'- -AGGUGcGGUUGUCCG------------GG--GGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 37717 0.68 0.307939
Target:  5'- gUCguCGCCGACggcacgaugaAGGCgcugcugggcaUCCCGGCugCCg -3'
miRNA:   3'- -AGguGCGGUUG----------UCCG-----------GGGGCCGugGG- -5'
19263 5' -62.8 NC_004685.1 + 37406 0.73 0.147071
Target:  5'- gCCGCGCCAcCAGGaCCgCCC-GCGCCa -3'
miRNA:   3'- aGGUGCGGUuGUCC-GG-GGGcCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 37009 0.66 0.411067
Target:  5'- gUCCugGCU----GGCCCCgCGGUugUCc -3'
miRNA:   3'- -AGGugCGGuuguCCGGGG-GCCGugGG- -5'
19263 5' -62.8 NC_004685.1 + 36378 0.68 0.315125
Target:  5'- gCCGCGCCcGACGGcGgCCUgGGCAacuucCCCg -3'
miRNA:   3'- aGGUGCGG-UUGUC-CgGGGgCCGU-----GGG- -5'
19263 5' -62.8 NC_004685.1 + 35169 0.68 0.307227
Target:  5'- cUCCA-GCCGAgcCAGGCguucuggCUCCGGCuCCCa -3'
miRNA:   3'- -AGGUgCGGUU--GUCCG-------GGGGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 34979 0.66 0.419844
Target:  5'- cCCACGCCAucuacaucgGCGGGCUgU--GCACCUg -3'
miRNA:   3'- aGGUGCGGU---------UGUCCGGgGgcCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 34429 0.67 0.337439
Target:  5'- gUgACGCgGACAcgcguguuguGGCCgCgGGCACCCc -3'
miRNA:   3'- aGgUGCGgUUGU----------CCGGgGgCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 34365 0.66 0.419844
Target:  5'- aUCC-CGCCGAa--GCCUgCGGCuggACCCg -3'
miRNA:   3'- -AGGuGCGGUUgucCGGGgGCCG---UGGG- -5'
19263 5' -62.8 NC_004685.1 + 34131 0.69 0.28045
Target:  5'- -gCGCGaUCAGCAGuGCCCaCGGC-CCCa -3'
miRNA:   3'- agGUGC-GGUUGUC-CGGGgGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 33412 0.66 0.402406
Target:  5'- gCCGCGCC-GCAGcGCa-CCGGCcuGCUCg -3'
miRNA:   3'- aGGUGCGGuUGUC-CGggGGCCG--UGGG- -5'
19263 5' -62.8 NC_004685.1 + 33129 0.7 0.225779
Target:  5'- cCCGCGUCGcCGGGCgCgCCGGUgugcagGCCCa -3'
miRNA:   3'- aGGUGCGGUuGUCCGgG-GGCCG------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 33078 0.66 0.393861
Target:  5'- cCCGCGgCGAgcgcacccgcCAGGUCCUCGGCgucgGCCa -3'
miRNA:   3'- aGGUGCgGUU----------GUCCGGGGGCCG----UGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.