miRNA display CGI


Results 101 - 120 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 5' -62.8 NC_004685.1 + 23307 0.67 0.337439
Target:  5'- cUCAgGCCAAgAGGCCCaaGGUugaugaGCCUg -3'
miRNA:   3'- aGGUgCGGUUgUCCGGGggCCG------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 23001 0.68 0.322437
Target:  5'- aUCGcCGCCGAUAGGCCCggUgGGaugcCACCCg -3'
miRNA:   3'- aGGU-GCGGUUGUCCGGG--GgCC----GUGGG- -5'
19263 5' -62.8 NC_004685.1 + 22266 0.69 0.28045
Target:  5'- gUCCaagguGCGCUggucggcgGGCGGGCCuCCCGGUucgucgucgcGCCCc -3'
miRNA:   3'- -AGG-----UGCGG--------UUGUCCGG-GGGCCG----------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 22062 0.68 0.315125
Target:  5'- aCCaACGCCgAGCAcGGCCCaCUGGgAgCCg -3'
miRNA:   3'- aGG-UGCGG-UUGU-CCGGG-GGCCgUgGG- -5'
19263 5' -62.8 NC_004685.1 + 21895 0.68 0.315125
Target:  5'- gUCCAa-CUGACGGGCCUUgGGCuuacGCCCg -3'
miRNA:   3'- -AGGUgcGGUUGUCCGGGGgCCG----UGGG- -5'
19263 5' -62.8 NC_004685.1 + 20770 0.68 0.303687
Target:  5'- gUCgACGCCGcuaucucggcgaugcGCGGcaGCCCCguCGGCACCg -3'
miRNA:   3'- -AGgUGCGGU---------------UGUC--CGGGG--GCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 19808 0.67 0.377129
Target:  5'- cCCGCGaCCGcugcGCuGGaaaUCCCGGCcCCCa -3'
miRNA:   3'- aGGUGC-GGU----UGuCCg--GGGGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 19402 0.69 0.248875
Target:  5'- aUCACGaCGACGGGCCaagCCUGGUGuCCCg -3'
miRNA:   3'- aGGUGCgGUUGUCCGG---GGGCCGU-GGG- -5'
19263 5' -62.8 NC_004685.1 + 19355 0.69 0.254946
Target:  5'- gCCGCGgCGAagucGG-CCCCGGCAgCCCg -3'
miRNA:   3'- aGGUGCgGUUgu--CCgGGGGCCGU-GGG- -5'
19263 5' -62.8 NC_004685.1 + 19116 0.73 0.143321
Target:  5'- gCCGCGCUGG-AGGCggCgCCGGCGCCCa -3'
miRNA:   3'- aGGUGCGGUUgUCCG--GgGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 17031 0.71 0.189744
Target:  5'- uUCCACGUCGGCuGGUUCgaGGaCACCCu -3'
miRNA:   3'- -AGGUGCGGUUGuCCGGGggCC-GUGGG- -5'
19263 5' -62.8 NC_004685.1 + 16873 0.67 0.352943
Target:  5'- gUCCAU-CCAGaagaAGGCCCCCgcuaagaaGGCcacgGCCCg -3'
miRNA:   3'- -AGGUGcGGUUg---UCCGGGGG--------CCG----UGGG- -5'
19263 5' -62.8 NC_004685.1 + 16318 0.73 0.139297
Target:  5'- -gCugGCCAGCAucgccgcGGCCaCCGGCGCCg -3'
miRNA:   3'- agGugCGGUUGU-------CCGGgGGCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 15595 0.66 0.393861
Target:  5'- gCCcCGUCGACuacaaCCCCGGCgACCCu -3'
miRNA:   3'- aGGuGCGGUUGuccg-GGGGCCG-UGGG- -5'
19263 5' -62.8 NC_004685.1 + 14177 0.71 0.209671
Target:  5'- cUCGCGCCu--GGGCCUgcacauuuacgUCGGCACCCc -3'
miRNA:   3'- aGGUGCGGuugUCCGGG-----------GGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 12863 0.78 0.059624
Target:  5'- gCCACGaCGGCGGGCagaCCUGGCAUCCg -3'
miRNA:   3'- aGGUGCgGUUGUCCGg--GGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 12429 0.66 0.428732
Target:  5'- gCCAuCGCCGAgaAGGCggcagCCCuGCGCCCc -3'
miRNA:   3'- aGGU-GCGGUUg-UCCGg----GGGcCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 11143 0.72 0.162979
Target:  5'- gCCgACGCCAccaACGGGUUCaCCGGCGCUg -3'
miRNA:   3'- aGG-UGCGGU---UGUCCGGG-GGCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 10944 0.66 0.393861
Target:  5'- aCCGCGCCgGGCAGGCgUUcgucaugaugaCGGCcacgACCCg -3'
miRNA:   3'- aGGUGCGG-UUGUCCGgGG-----------GCCG----UGGG- -5'
19263 5' -62.8 NC_004685.1 + 10138 0.66 0.385435
Target:  5'- gCUGCGacCCGACGGGCUggcaGGCACCCc -3'
miRNA:   3'- aGGUGC--GGUUGUCCGGggg-CCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.