miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 5' -62.8 NC_004685.1 + 65959 0.67 0.329126
Target:  5'- ---uCGCCAACuggcGGCCCauuguguCgGGCACCCg -3'
miRNA:   3'- agguGCGGUUGu---CCGGG-------GgCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 9960 0.67 0.329875
Target:  5'- aUCCGCGgCGACGuGGacuaCCCG-CACCCg -3'
miRNA:   3'- -AGGUGCgGUUGU-CCgg--GGGCcGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 30998 0.66 0.385435
Target:  5'- gCCGgGUgAGCuGGUCCCCuccaGGaCGCCCa -3'
miRNA:   3'- aGGUgCGgUUGuCCGGGGG----CC-GUGGG- -5'
19263 5' -62.8 NC_004685.1 + 37009 0.66 0.411067
Target:  5'- gUCCugGCU----GGCCCCgCGGUugUCc -3'
miRNA:   3'- -AGGugCGGuuguCCGGGG-GCCGugGG- -5'
19263 5' -62.8 NC_004685.1 + 39231 0.69 0.28045
Target:  5'- uUCgGCGCCGgcugggggACGGGCUugCCCaGCGCCUc -3'
miRNA:   3'- -AGgUGCGGU--------UGUCCGG--GGGcCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 29177 0.68 0.315125
Target:  5'- gUCCggccaggaACGCCAGCGGGCCgagCaGCGCCUg -3'
miRNA:   3'- -AGG--------UGCGGUUGUCCGGgg-GcCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 58308 0.67 0.345129
Target:  5'- aUUCGCGCCA----GCCUCCGGCgaguggucaccaGCCCu -3'
miRNA:   3'- -AGGUGCGGUugucCGGGGGCCG------------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 12429 0.66 0.428732
Target:  5'- gCCAuCGCCGAgaAGGCggcagCCCuGCGCCCc -3'
miRNA:   3'- aGGU-GCGGUUg-UCCGg----GGGcCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 46989 0.68 0.32023
Target:  5'- gUCCACGCCGaccgcggugACAaccuccucgacaguGGCCCCgCGGaaCGCCg -3'
miRNA:   3'- -AGGUGCGGU---------UGU--------------CCGGGG-GCC--GUGGg -5'
19263 5' -62.8 NC_004685.1 + 52225 0.66 0.428732
Target:  5'- cUCgGCGUCGGCGGGCUUgC-GCGCCa -3'
miRNA:   3'- -AGgUGCGGUUGUCCGGGgGcCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 67300 0.67 0.345129
Target:  5'- aCCGCGCCGccaagcucguGCuGGCCgaacgcuggCCCGGgguGCCCa -3'
miRNA:   3'- aGGUGCGGU----------UGuCCGG---------GGGCCg--UGGG- -5'
19263 5' -62.8 NC_004685.1 + 23001 0.68 0.322437
Target:  5'- aUCGcCGCCGAUAGGCCCggUgGGaugcCACCCg -3'
miRNA:   3'- aGGU-GCGGUUGUCCGGG--GgCC----GUGGG- -5'
19263 5' -62.8 NC_004685.1 + 2429 0.67 0.360882
Target:  5'- aCCugGUgCucCAGGUCCCCGcGUGCUCg -3'
miRNA:   3'- aGGugCG-GuuGUCCGGGGGC-CGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 10138 0.66 0.385435
Target:  5'- gCUGCGacCCGACGGGCUggcaGGCACCCc -3'
miRNA:   3'- aGGUGC--GGUUGUCCGGggg-CCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 33078 0.66 0.393861
Target:  5'- cCCGCGgCGAgcgcacccgcCAGGUCCUCGGCgucgGCCa -3'
miRNA:   3'- aGGUGCgGUU----------GUCCGGGGGCCG----UGGg -5'
19263 5' -62.8 NC_004685.1 + 55933 0.66 0.411067
Target:  5'- -gUACGCCAGCA-GCagCCCGGCGaugCCg -3'
miRNA:   3'- agGUGCGGUUGUcCGg-GGGCCGUg--GG- -5'
19263 5' -62.8 NC_004685.1 + 19355 0.69 0.254946
Target:  5'- gCCGCGgCGAagucGG-CCCCGGCAgCCCg -3'
miRNA:   3'- aGGUGCgGUUgu--CCgGGGGCCGU-GGG- -5'
19263 5' -62.8 NC_004685.1 + 34131 0.69 0.28045
Target:  5'- -gCGCGaUCAGCAGuGCCCaCGGC-CCCa -3'
miRNA:   3'- agGUGC-GGUUGUC-CGGGgGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 35169 0.68 0.307227
Target:  5'- cUCCA-GCCGAgcCAGGCguucuggCUCCGGCuCCCa -3'
miRNA:   3'- -AGGUgCGGUU--GUCCG-------GGGGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 43878 0.68 0.315125
Target:  5'- gCgGCGCUGACcGGCCCaCCGccGCuGCCCg -3'
miRNA:   3'- aGgUGCGGUUGuCCGGG-GGC--CG-UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.