miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 5' -62.8 NC_004685.1 + 12429 0.66 0.428732
Target:  5'- gCCAuCGCCGAgaAGGCggcagCCCuGCGCCCc -3'
miRNA:   3'- aGGU-GCGGUUg-UCCGg----GGGcCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 59222 0.68 0.287134
Target:  5'- gCCGCGgucCCGAUAGGCCaCCCGcugugucaGCuCCCg -3'
miRNA:   3'- aGGUGC---GGUUGUCCGG-GGGC--------CGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 52225 0.66 0.428732
Target:  5'- cUCgGCGUCGGCGGGCUUgC-GCGCCa -3'
miRNA:   3'- -AGgUGCGGUUGUCCGGGgGcCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 60430 0.66 0.428732
Target:  5'- aUCACGCgGGguuuCGGcGgCCCCGGCgcugGCCCa -3'
miRNA:   3'- aGGUGCGgUU----GUC-CgGGGGCCG----UGGG- -5'
19263 5' -62.8 NC_004685.1 + 31727 0.73 0.15091
Target:  5'- aUCCACGCCuuCGGGCaCCguguaggugCCGGCcagcuccgaccACCCg -3'
miRNA:   3'- -AGGUGCGGuuGUCCG-GG---------GGCCG-----------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 12863 0.78 0.059624
Target:  5'- gCCACGaCGGCGGGCagaCCUGGCAUCCg -3'
miRNA:   3'- aGGUGCgGUUGUCCGg--GGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 55933 0.66 0.411067
Target:  5'- -gUACGCCAGCA-GCagCCCGGCGaugCCg -3'
miRNA:   3'- agGUGCGGUUGUcCGg-GGGCCGUg--GG- -5'
19263 5' -62.8 NC_004685.1 + 33129 0.7 0.225779
Target:  5'- cCCGCGUCGcCGGGCgCgCCGGUgugcagGCCCa -3'
miRNA:   3'- aGGUGCGGUuGUCCGgG-GGCCG------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 19355 0.69 0.254946
Target:  5'- gCCGCGgCGAagucGG-CCCCGGCAgCCCg -3'
miRNA:   3'- aGGUGCgGUUgu--CCgGGGGCCGU-GGG- -5'
19263 5' -62.8 NC_004685.1 + 34131 0.69 0.28045
Target:  5'- -gCGCGaUCAGCAGuGCCCaCGGC-CCCa -3'
miRNA:   3'- agGUGC-GGUUGUC-CGGGgGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 22062 0.68 0.315125
Target:  5'- aCCaACGCCgAGCAcGGCCCaCUGGgAgCCg -3'
miRNA:   3'- aGG-UGCGG-UUGU-CCGGG-GGCCgUgGG- -5'
19263 5' -62.8 NC_004685.1 + 37406 0.73 0.147071
Target:  5'- gCCGCGCCAcCAGGaCCgCCC-GCGCCa -3'
miRNA:   3'- aGGUGCGGUuGUCC-GG-GGGcCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 46989 0.68 0.32023
Target:  5'- gUCCACGCCGaccgcggugACAaccuccucgacaguGGCCCCgCGGaaCGCCg -3'
miRNA:   3'- -AGGUGCGGU---------UGU--------------CCGGGG-GCC--GUGGg -5'
19263 5' -62.8 NC_004685.1 + 65959 0.67 0.329126
Target:  5'- ---uCGCCAACuggcGGCCCauuguguCgGGCACCCg -3'
miRNA:   3'- agguGCGGUUGu---CCGGG-------GgCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 9960 0.67 0.329875
Target:  5'- aUCCGCGgCGACGuGGacuaCCCG-CACCCg -3'
miRNA:   3'- -AGGUGCgGUUGU-CCgg--GGGCcGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 2429 0.67 0.360882
Target:  5'- aCCugGUgCucCAGGUCCCCGcGUGCUCg -3'
miRNA:   3'- aGGugCG-GuuGUCCGGGGGC-CGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 10138 0.66 0.385435
Target:  5'- gCUGCGacCCGACGGGCUggcaGGCACCCc -3'
miRNA:   3'- aGGUGC--GGUUGUCCGGggg-CCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 33078 0.66 0.393861
Target:  5'- cCCGCGgCGAgcgcacccgcCAGGUCCUCGGCgucgGCCa -3'
miRNA:   3'- aGGUGCgGUU----------GUCCGGGGGCCG----UGGg -5'
19263 5' -62.8 NC_004685.1 + 9423 0.71 0.185029
Target:  5'- aUCAC-CCAuGCGGGCCgaCCGGCGCCg -3'
miRNA:   3'- aGGUGcGGU-UGUCCGGg-GGCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 66381 0.68 0.300179
Target:  5'- gCCGuCGUCGACGaugcgcacacggcGGCCCgaCGGCACCa -3'
miRNA:   3'- aGGU-GCGGUUGU-------------CCGGGg-GCCGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.