miRNA display CGI


Results 61 - 80 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 5' -62.8 NC_004685.1 + 64689 0.68 0.287134
Target:  5'- aCCAuCGCCucCAGcgaccacugcuuGCUCCaCGGCGCCCc -3'
miRNA:   3'- aGGU-GCGGuuGUC------------CGGGG-GCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 51890 0.68 0.293944
Target:  5'- cCCGCcugaCCAGCAccguGGCCUgagCGGCACCCu -3'
miRNA:   3'- aGGUGc---GGUUGU----CCGGGg--GCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 61897 0.68 0.293944
Target:  5'- cCCGagUGCC-ACAGGCCgUCGcGCACCg -3'
miRNA:   3'- aGGU--GCGGuUGUCCGGgGGC-CGUGGg -5'
19263 5' -62.8 NC_004685.1 + 6933 0.66 0.393013
Target:  5'- gCCucaGCCcACcguGGCCCCCGaGCcggucaaGCCCg -3'
miRNA:   3'- aGGug-CGGuUGu--CCGGGGGC-CG-------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 23930 0.73 0.147071
Target:  5'- aCCGCGCagcgAACAcGcGCCgCCCGGCgACCCg -3'
miRNA:   3'- aGGUGCGg---UUGU-C-CGG-GGGCCG-UGGG- -5'
19263 5' -62.8 NC_004685.1 + 48770 0.71 0.185029
Target:  5'- cCCAgcauguCGCCAAUcucgauGGGCUcaCCCGGCACCUu -3'
miRNA:   3'- aGGU------GCGGUUG------UCCGG--GGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 17031 0.71 0.189744
Target:  5'- uUCCACGUCGGCuGGUUCgaGGaCACCCu -3'
miRNA:   3'- -AGGUGCGGUUGuCCGGGggCC-GUGGG- -5'
19263 5' -62.8 NC_004685.1 + 14177 0.71 0.209671
Target:  5'- cUCGCGCCu--GGGCCUgcacauuuacgUCGGCACCCc -3'
miRNA:   3'- aGGUGCGGuugUCCGGG-----------GGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 66381 0.68 0.300179
Target:  5'- gCCGuCGUCGACGaugcgcacacggcGGCCCgaCGGCACCa -3'
miRNA:   3'- aGGU-GCGGUUGU-------------CCGGGg-GCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 54927 0.67 0.368944
Target:  5'- cUCCAgGUCGauGCAGaaauacuCCUgCGGCACCCa -3'
miRNA:   3'- -AGGUgCGGU--UGUCc------GGGgGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 29447 0.67 0.376305
Target:  5'- aCUugGCCGAgGGGUUCC-GGCagcuggaGCCCg -3'
miRNA:   3'- aGGugCGGUUgUCCGGGGgCCG-------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 69587 0.67 0.376305
Target:  5'- aCCGCcuagcgGCCAACGGGCgCgCGuccacacgggcgcGCGCCCg -3'
miRNA:   3'- aGGUG------CGGUUGUCCGgGgGC-------------CGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 19808 0.67 0.377129
Target:  5'- cCCGCGaCCGcugcGCuGGaaaUCCCGGCcCCCa -3'
miRNA:   3'- aGGUGC-GGU----UGuCCg--GGGGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 51364 0.67 0.377129
Target:  5'- aUCCcUGCgCGACAGGgCCaCCuGCACCg -3'
miRNA:   3'- -AGGuGCG-GUUGUCCgGG-GGcCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 51656 0.66 0.385435
Target:  5'- aCCAUGaacugCGGCAGcGCCUcgUCGGUGCCCg -3'
miRNA:   3'- aGGUGCg----GUUGUC-CGGG--GGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 42794 0.66 0.393013
Target:  5'- aUCCGucgguguCGUgGACccuGGCUCCCGGCcaggucGCCCu -3'
miRNA:   3'- -AGGU-------GCGgUUGu--CCGGGGGCCG------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 15595 0.66 0.393861
Target:  5'- gCCcCGUCGACuacaaCCCCGGCgACCCu -3'
miRNA:   3'- aGGuGCGGUUGuccg-GGGGCCG-UGGG- -5'
19263 5' -62.8 NC_004685.1 + 52316 0.66 0.393861
Target:  5'- gCCggACGCCGuaguaGCGGGCCaguugCCG-CGCCCg -3'
miRNA:   3'- aGG--UGCGGU-----UGUCCGGg----GGCcGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 49662 0.66 0.393861
Target:  5'- aUCCGCcCCGGCGGGUCgCCCGacucGCGCa- -3'
miRNA:   3'- -AGGUGcGGUUGUCCGG-GGGC----CGUGgg -5'
19263 5' -62.8 NC_004685.1 + 57667 0.68 0.293944
Target:  5'- cUUCACGUCGGCGuuGGCgUCCGGCgagagcaucuGCCCc -3'
miRNA:   3'- -AGGUGCGGUUGU--CCGgGGGCCG----------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.