miRNA display CGI


Results 81 - 100 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 5' -62.8 NC_004685.1 + 62135 0.67 0.329875
Target:  5'- -gCugGCCAccagGCGGGCCaCCuGCACCg -3'
miRNA:   3'- agGugCGGU----UGUCCGGgGGcCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 23307 0.67 0.337439
Target:  5'- cUCAgGCCAAgAGGCCCaaGGUugaugaGCCUg -3'
miRNA:   3'- aGGUgCGGUUgUCCGGGggCCG------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 34429 0.67 0.337439
Target:  5'- gUgACGCgGACAcgcguguuguGGCCgCgGGCACCCc -3'
miRNA:   3'- aGgUGCGgUUGU----------CCGGgGgCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 15595 0.66 0.393861
Target:  5'- gCCcCGUCGACuacaaCCCCGGCgACCCu -3'
miRNA:   3'- aGGuGCGGUUGuccg-GGGGCCG-UGGG- -5'
19263 5' -62.8 NC_004685.1 + 42794 0.66 0.393013
Target:  5'- aUCCGucgguguCGUgGACccuGGCUCCCGGCcaggucGCCCu -3'
miRNA:   3'- -AGGU-------GCGgUUGu--CCGGGGGCCG------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 6933 0.66 0.393013
Target:  5'- gCCucaGCCcACcguGGCCCCCGaGCcggucaaGCCCg -3'
miRNA:   3'- aGGug-CGGuUGu--CCGGGGGC-CG-------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 51656 0.66 0.385435
Target:  5'- aCCAUGaacugCGGCAGcGCCUcgUCGGUGCCCg -3'
miRNA:   3'- aGGUGCg----GUUGUC-CGGG--GGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 51364 0.67 0.377129
Target:  5'- aUCCcUGCgCGACAGGgCCaCCuGCACCg -3'
miRNA:   3'- -AGGuGCG-GUUGUCCgGG-GGcCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 19808 0.67 0.377129
Target:  5'- cCCGCGaCCGcugcGCuGGaaaUCCCGGCcCCCa -3'
miRNA:   3'- aGGUGC-GGU----UGuCCg--GGGGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 69587 0.67 0.376305
Target:  5'- aCCGCcuagcgGCCAACGGGCgCgCGuccacacgggcgcGCGCCCg -3'
miRNA:   3'- aGGUG------CGGUUGUCCGgGgGC-------------CGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 29447 0.67 0.376305
Target:  5'- aCUugGCCGAgGGGUUCC-GGCagcuggaGCCCg -3'
miRNA:   3'- aGGugCGGUUgUCCGGGGgCCG-------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 54927 0.67 0.368944
Target:  5'- cUCCAgGUCGauGCAGaaauacuCCUgCGGCACCCa -3'
miRNA:   3'- -AGGUgCGGU--UGUCc------GGGgGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 42269 0.67 0.368944
Target:  5'- cUCCGCGUCAugucGCAGGCCaCCUacgauGGUcucgGCUCg -3'
miRNA:   3'- -AGGUGCGGU----UGUCCGG-GGG-----CCG----UGGG- -5'
19263 5' -62.8 NC_004685.1 + 39093 0.67 0.368944
Target:  5'- -aCGCgGCCGACGGGUUCgCCGGguUCUa -3'
miRNA:   3'- agGUG-CGGUUGUCCGGG-GGCCguGGG- -5'
19263 5' -62.8 NC_004685.1 + 28797 0.67 0.368132
Target:  5'- gCgACGCCuacgagaAGCAGGCCCgCGcgGCCCg -3'
miRNA:   3'- aGgUGCGG-------UUGUCCGGGgGCcgUGGG- -5'
19263 5' -62.8 NC_004685.1 + 43387 0.67 0.360882
Target:  5'- aCCGCuUCAACGGGgCCgCGGCGCa- -3'
miRNA:   3'- aGGUGcGGUUGUCCgGGgGCCGUGgg -5'
19263 5' -62.8 NC_004685.1 + 31094 0.67 0.358487
Target:  5'- cUCgACGCCGACuucggcaucagcaaGGGCCUCgcaGGCAUCg -3'
miRNA:   3'- -AGgUGCGGUUG--------------UCCGGGGg--CCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 59877 0.67 0.352943
Target:  5'- cCCGCG-CAGCGuGCCCUCaGCGCCa -3'
miRNA:   3'- aGGUGCgGUUGUcCGGGGGcCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 4435 0.67 0.352943
Target:  5'- gUUCGCGUCAGgccgcguuCGGGCgCCCCGGCGa-- -3'
miRNA:   3'- -AGGUGCGGUU--------GUCCG-GGGGCCGUggg -5'
19263 5' -62.8 NC_004685.1 + 64236 0.67 0.345129
Target:  5'- cCCGCGCCGgcccgcagauACAGGUccaCCCUGGCcagGCUg -3'
miRNA:   3'- aGGUGCGGU----------UGUCCG---GGGGCCG---UGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.