miRNA display CGI


Results 101 - 120 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 5' -62.8 NC_004685.1 + 19808 0.67 0.377129
Target:  5'- cCCGCGaCCGcugcGCuGGaaaUCCCGGCcCCCa -3'
miRNA:   3'- aGGUGC-GGU----UGuCCg--GGGGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 69587 0.67 0.376305
Target:  5'- aCCGCcuagcgGCCAACGGGCgCgCGuccacacgggcgcGCGCCCg -3'
miRNA:   3'- aGGUG------CGGUUGUCCGgGgGC-------------CGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 29447 0.67 0.376305
Target:  5'- aCUugGCCGAgGGGUUCC-GGCagcuggaGCCCg -3'
miRNA:   3'- aGGugCGGUUgUCCGGGGgCCG-------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 34365 0.66 0.419844
Target:  5'- aUCC-CGCCGAa--GCCUgCGGCuggACCCg -3'
miRNA:   3'- -AGGuGCGGUUgucCGGGgGCCG---UGGG- -5'
19263 5' -62.8 NC_004685.1 + 32288 0.66 0.427839
Target:  5'- gUCCugGUggcgcggcgaccgCAGC-GGCCCUgcagauCGGCAUCCa -3'
miRNA:   3'- -AGGugCG-------------GUUGuCCGGGG------GCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 37717 0.68 0.307939
Target:  5'- gUCguCGCCGACggcacgaugaAGGCgcugcugggcaUCCCGGCugCCg -3'
miRNA:   3'- -AGguGCGGUUG----------UCCG-----------GGGGCCGugGG- -5'
19263 5' -62.8 NC_004685.1 + 66931 0.68 0.315125
Target:  5'- gUCACGUCAGCGuuGGUCgCgGGCAgCCCg -3'
miRNA:   3'- aGGUGCGGUUGU--CCGGgGgCCGU-GGG- -5'
19263 5' -62.8 NC_004685.1 + 36378 0.68 0.315125
Target:  5'- gCCGCGCCcGACGGcGgCCUgGGCAacuucCCCg -3'
miRNA:   3'- aGGUGCGG-UUGUC-CgGGGgCCGU-----GGG- -5'
19263 5' -62.8 NC_004685.1 + 30653 0.68 0.315125
Target:  5'- cCCG-GCCGAUuGGCaguccacgCCCGGCACCUu -3'
miRNA:   3'- aGGUgCGGUUGuCCGg-------GGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 58962 0.68 0.3217
Target:  5'- gUCCA-GCCGcaccACcGGCCaguuccaCUCGGCGCCCa -3'
miRNA:   3'- -AGGUgCGGU----UGuCCGG-------GGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 44239 0.67 0.329875
Target:  5'- --aGCGCCGcaGCAgcccGGCCCgaucUUGGCGCCCg -3'
miRNA:   3'- aggUGCGGU--UGU----CCGGG----GGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 62135 0.67 0.329875
Target:  5'- -gCugGCCAccagGCGGGCCaCCuGCACCg -3'
miRNA:   3'- agGugCGGU----UGUCCGGgGGcCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 23307 0.67 0.337439
Target:  5'- cUCAgGCCAAgAGGCCCaaGGUugaugaGCCUg -3'
miRNA:   3'- aGGUgCGGUUgUCCGGGggCCG------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 34429 0.67 0.337439
Target:  5'- gUgACGCgGACAcgcguguuguGGCCgCgGGCACCCc -3'
miRNA:   3'- aGgUGCGgUUGU----------CCGGgGgCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 64236 0.67 0.345129
Target:  5'- cCCGCGCCGgcccgcagauACAGGUccaCCCUGGCcagGCUg -3'
miRNA:   3'- aGGUGCGGU----------UGUCCG---GGGGCCG---UGGg -5'
19263 5' -62.8 NC_004685.1 + 59877 0.67 0.352943
Target:  5'- cCCGCG-CAGCGuGCCCUCaGCGCCa -3'
miRNA:   3'- aGGUGCgGUUGUcCGGGGGcCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 4435 0.67 0.352943
Target:  5'- gUUCGCGUCAGgccgcguuCGGGCgCCCCGGCGa-- -3'
miRNA:   3'- -AGGUGCGGUU--------GUCCG-GGGGCCGUggg -5'
19263 5' -62.8 NC_004685.1 + 41556 0.66 0.428732
Target:  5'- aUCGCGUCGAC-GGCUgCggugGGCGCCCc -3'
miRNA:   3'- aGGUGCGGUUGuCCGGgGg---CCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 2084 0.66 0.428732
Target:  5'- gUCGCGCUGAuCGGGUCCCauuCGGC-CCa -3'
miRNA:   3'- aGGUGCGGUU-GUCCGGGG---GCCGuGGg -5'
19263 5' -62.8 NC_004685.1 + 46423 0.66 0.428732
Target:  5'- uUCUACGC--AguGGCCCC-GGUGCUCg -3'
miRNA:   3'- -AGGUGCGguUguCCGGGGgCCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.