Results 21 - 40 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19263 | 5' | -62.8 | NC_004685.1 | + | 52316 | 0.66 | 0.393861 |
Target: 5'- gCCggACGCCGuaguaGCGGGCCaguugCCG-CGCCCg -3' miRNA: 3'- aGG--UGCGGU-----UGUCCGGg----GGCcGUGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 31419 | 0.66 | 0.393861 |
Target: 5'- aCCGCguGCCcuACGGuuuGCCgCCCGGUACCg -3' miRNA: 3'- aGGUG--CGGu-UGUC---CGG-GGGCCGUGGg -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 66214 | 0.66 | 0.393861 |
Target: 5'- aCgACGCCAACAagggcuGCCCUCaGuGCAUCCg -3' miRNA: 3'- aGgUGCGGUUGUc-----CGGGGG-C-CGUGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 15595 | 0.66 | 0.393861 |
Target: 5'- gCCcCGUCGACuacaaCCCCGGCgACCCu -3' miRNA: 3'- aGGuGCGGUUGuccg-GGGGCCG-UGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 42794 | 0.66 | 0.393013 |
Target: 5'- aUCCGucgguguCGUgGACccuGGCUCCCGGCcaggucGCCCu -3' miRNA: 3'- -AGGU-------GCGgUUGu--CCGGGGGCCG------UGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 6933 | 0.66 | 0.393013 |
Target: 5'- gCCucaGCCcACcguGGCCCCCGaGCcggucaaGCCCg -3' miRNA: 3'- aGGug-CGGuUGu--CCGGGGGC-CG-------UGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 51656 | 0.66 | 0.385435 |
Target: 5'- aCCAUGaacugCGGCAGcGCCUcgUCGGUGCCCg -3' miRNA: 3'- aGGUGCg----GUUGUC-CGGG--GGCCGUGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 10138 | 0.66 | 0.385435 |
Target: 5'- gCUGCGacCCGACGGGCUggcaGGCACCCc -3' miRNA: 3'- aGGUGC--GGUUGUCCGGggg-CCGUGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 30998 | 0.66 | 0.385435 |
Target: 5'- gCCGgGUgAGCuGGUCCCCuccaGGaCGCCCa -3' miRNA: 3'- aGGUgCGgUUGuCCGGGGG----CC-GUGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 51364 | 0.67 | 0.377129 |
Target: 5'- aUCCcUGCgCGACAGGgCCaCCuGCACCg -3' miRNA: 3'- -AGGuGCG-GUUGUCCgGG-GGcCGUGGg -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 19808 | 0.67 | 0.377129 |
Target: 5'- cCCGCGaCCGcugcGCuGGaaaUCCCGGCcCCCa -3' miRNA: 3'- aGGUGC-GGU----UGuCCg--GGGGCCGuGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 59537 | 0.67 | 0.377129 |
Target: 5'- -gUACGCCAGCuu-CUCCCGGCagaacagggcguGCCCg -3' miRNA: 3'- agGUGCGGUUGuccGGGGGCCG------------UGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 29447 | 0.67 | 0.376305 |
Target: 5'- aCUugGCCGAgGGGUUCC-GGCagcuggaGCCCg -3' miRNA: 3'- aGGugCGGUUgUCCGGGGgCCG-------UGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 69587 | 0.67 | 0.376305 |
Target: 5'- aCCGCcuagcgGCCAACGGGCgCgCGuccacacgggcgcGCGCCCg -3' miRNA: 3'- aGGUG------CGGUUGUCCGgGgGC-------------CGUGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 49625 | 0.67 | 0.368944 |
Target: 5'- --aACGCCAGguGGUCgaggaacgCCCGGUucACCCg -3' miRNA: 3'- aggUGCGGUUguCCGG--------GGGCCG--UGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 54927 | 0.67 | 0.368944 |
Target: 5'- cUCCAgGUCGauGCAGaaauacuCCUgCGGCACCCa -3' miRNA: 3'- -AGGUgCGGU--UGUCc------GGGgGCCGUGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 39093 | 0.67 | 0.368944 |
Target: 5'- -aCGCgGCCGACGGGUUCgCCGGguUCUa -3' miRNA: 3'- agGUG-CGGUUGUCCGGG-GGCCguGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 42269 | 0.67 | 0.368944 |
Target: 5'- cUCCGCGUCAugucGCAGGCCaCCUacgauGGUcucgGCUCg -3' miRNA: 3'- -AGGUGCGGU----UGUCCGG-GGG-----CCG----UGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 28797 | 0.67 | 0.368132 |
Target: 5'- gCgACGCCuacgagaAGCAGGCCCgCGcgGCCCg -3' miRNA: 3'- aGgUGCGG-------UUGUCCGGGgGCcgUGGG- -5' |
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19263 | 5' | -62.8 | NC_004685.1 | + | 43387 | 0.67 | 0.360882 |
Target: 5'- aCCGCuUCAACGGGgCCgCGGCGCa- -3' miRNA: 3'- aGGUGcGGUUGUCCgGGgGCCGUGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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