miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19265 3' -56 NC_004685.1 + 11745 0.66 0.716421
Target:  5'- cG-CUGUGCccgauggagCGCCGcgaggagcugcacgcAGCCAUCGCCg -3'
miRNA:   3'- aCaGACGCGa--------GUGGCu--------------UCGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 12595 0.66 0.715372
Target:  5'- gUGUCcgaacGCGC-CGCCGAGGUgcgCAagGCCg -3'
miRNA:   3'- -ACAGa----CGCGaGUGGCUUCG---GUagCGG- -5'
19265 3' -56 NC_004685.1 + 69096 0.66 0.715372
Target:  5'- ----cGCGCUCACCGAAGaacuCCAgaaGCa -3'
miRNA:   3'- acagaCGCGAGUGGCUUC----GGUag-CGg -5'
19265 3' -56 NC_004685.1 + 15631 0.66 0.715372
Target:  5'- aGUC-GCGa-CGgCG-AGCCAUCGCCc -3'
miRNA:   3'- aCAGaCGCgaGUgGCuUCGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 64441 0.66 0.715372
Target:  5'- cGUCUGgGCg-GCC---GCCAUUGCCc -3'
miRNA:   3'- aCAGACgCGagUGGcuuCGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 11858 0.66 0.704836
Target:  5'- -aUCUGCGgugagaucgUCGCCGAcgacgugaacacGGCCcgCGCCu -3'
miRNA:   3'- acAGACGCg--------AGUGGCU------------UCGGuaGCGG- -5'
19265 3' -56 NC_004685.1 + 26528 0.66 0.704836
Target:  5'- cGUCU-CGC-CGCCGcacucgguGCgCGUCGCCa -3'
miRNA:   3'- aCAGAcGCGaGUGGCuu------CG-GUAGCGG- -5'
19265 3' -56 NC_004685.1 + 68234 0.67 0.694232
Target:  5'- aUG-CUGCGCgacaUCGCCGAAacgaUGUCGCCc -3'
miRNA:   3'- -ACaGACGCG----AGUGGCUUcg--GUAGCGG- -5'
19265 3' -56 NC_004685.1 + 67375 0.67 0.694232
Target:  5'- gGUC-GCGCaucCGCUGGAGCC-UCgGCCc -3'
miRNA:   3'- aCAGaCGCGa--GUGGCUUCGGuAG-CGG- -5'
19265 3' -56 NC_004685.1 + 12396 0.67 0.693168
Target:  5'- cUGgcgCUGUaccaaaaGCUCgACCaGGugcgGGCCAUCGCCg -3'
miRNA:   3'- -ACa--GACG-------CGAG-UGG-CU----UCGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 9384 0.67 0.68357
Target:  5'- cG-CgGCGCUgaGCCGGAuGgCGUCGCCg -3'
miRNA:   3'- aCaGaCGCGAg-UGGCUU-CgGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 11157 0.67 0.68357
Target:  5'- ----cGgGUUCACCGgcGCUgagAUCGCCg -3'
miRNA:   3'- acagaCgCGAGUGGCuuCGG---UAGCGG- -5'
19265 3' -56 NC_004685.1 + 48354 0.67 0.68357
Target:  5'- cGUCgcacaggGUGCgggugaCGAAGCgCAUCGCCu -3'
miRNA:   3'- aCAGa------CGCGagug--GCUUCG-GUAGCGG- -5'
19265 3' -56 NC_004685.1 + 8841 0.67 0.68357
Target:  5'- aUGUgCggcagGCGgUCACCGcGGgugacCCGUCGCCg -3'
miRNA:   3'- -ACA-Ga----CGCgAGUGGCuUC-----GGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 15240 0.67 0.672861
Target:  5'- --cCUGCGguucCUgGCCGAgcauggcuaugGGCUGUCGCCg -3'
miRNA:   3'- acaGACGC----GAgUGGCU-----------UCGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 62168 0.67 0.672861
Target:  5'- cGUCaa-GUUCGCCGGguacggcuugcGGCCcgCGCCu -3'
miRNA:   3'- aCAGacgCGAGUGGCU-----------UCGGuaGCGG- -5'
19265 3' -56 NC_004685.1 + 53455 0.67 0.672861
Target:  5'- aGcCUGCGUUCgacGCCGA-GCCAguacaggggaaCGCCg -3'
miRNA:   3'- aCaGACGCGAG---UGGCUuCGGUa----------GCGG- -5'
19265 3' -56 NC_004685.1 + 37173 0.67 0.672861
Target:  5'- gGUUcGCGCccUgGCCGAGcuugccGCCGUUGCCu -3'
miRNA:   3'- aCAGaCGCG--AgUGGCUU------CGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 27107 0.67 0.662114
Target:  5'- aUGUagUGCGacaUCGCCG-AGCCGUUGUa -3'
miRNA:   3'- -ACAg-ACGCg--AGUGGCuUCGGUAGCGg -5'
19265 3' -56 NC_004685.1 + 50321 0.67 0.662114
Target:  5'- -aUCaGCGggCuGCCGggGCCGacuUCGCCg -3'
miRNA:   3'- acAGaCGCgaG-UGGCuuCGGU---AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.