miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19268 3' -50.2 NC_004685.1 + 67180 0.66 0.961962
Target:  5'- --cGCGGccuccUUGCGCCCGGUCgGCcagcaCGAg -3'
miRNA:   3'- cuuUGCU-----AACGCGGGUUAGaCGa----GCU- -5'
19268 3' -50.2 NC_004685.1 + 3855 0.66 0.949273
Target:  5'- cGAggUGGgccagUGCcuGCUCGcgCUGCUCGGg -3'
miRNA:   3'- -CUuuGCUa----ACG--CGGGUuaGACGAGCU- -5'
19268 3' -50.2 NC_004685.1 + 55346 0.67 0.922441
Target:  5'- -cGACGGguugGCGUUCAuccaCUGCUCGAu -3'
miRNA:   3'- cuUUGCUaa--CGCGGGUua--GACGAGCU- -5'
19268 3' -50.2 NC_004685.1 + 22863 0.68 0.909674
Target:  5'- cGAggUGucgGCGCCCGG-CUGC-CGAc -3'
miRNA:   3'- -CUuuGCuaaCGCGGGUUaGACGaGCU- -5'
19268 3' -50.2 NC_004685.1 + 22336 0.68 0.902858
Target:  5'- ---cUGcgUGCGCUCGcgCUGUUCGGc -3'
miRNA:   3'- cuuuGCuaACGCGGGUuaGACGAGCU- -5'
19268 3' -50.2 NC_004685.1 + 19232 0.68 0.895756
Target:  5'- --uGCGGUUcGCGCCgAGUCUGCcCa- -3'
miRNA:   3'- cuuUGCUAA-CGCGGgUUAGACGaGcu -5'
19268 3' -50.2 NC_004685.1 + 51448 0.68 0.888375
Target:  5'- --uGCGAgcaccgUGCGCCCAGcCgacgacaGCUCGAu -3'
miRNA:   3'- cuuUGCUa-----ACGCGGGUUaGa------CGAGCU- -5'
19268 3' -50.2 NC_004685.1 + 32373 0.68 0.880718
Target:  5'- cGAGGCcc-UGCGCCCAcugcuccaaCUGCUCGGc -3'
miRNA:   3'- -CUUUGcuaACGCGGGUua-------GACGAGCU- -5'
19268 3' -50.2 NC_004685.1 + 38311 0.7 0.819995
Target:  5'- aGGACGGUgaagGCGCgggccuggCCGAUCUGCgCGAg -3'
miRNA:   3'- cUUUGCUAa---CGCG--------GGUUAGACGaGCU- -5'
19268 3' -50.2 NC_004685.1 + 38400 0.71 0.759747
Target:  5'- --cGCGGUgGCGUCCucguUCUGCUCGu -3'
miRNA:   3'- cuuUGCUAaCGCGGGuu--AGACGAGCu -5'
19268 3' -50.2 NC_004685.1 + 35170 0.72 0.727601
Target:  5'- --uACGuggUGCGCaCCAAcccgCUGCUCGAu -3'
miRNA:   3'- cuuUGCua-ACGCG-GGUUa---GACGAGCU- -5'
19268 3' -50.2 NC_004685.1 + 37110 0.72 0.71337
Target:  5'- --uGCGGUucggauccauguucUGCGCCgCGAUCUGCUCc- -3'
miRNA:   3'- cuuUGCUA--------------ACGCGG-GUUAGACGAGcu -5'
19268 3' -50.2 NC_004685.1 + 36698 0.8 0.30855
Target:  5'- --uGCG-UUGCGCCCu-UCUGCUCGAu -3'
miRNA:   3'- cuuUGCuAACGCGGGuuAGACGAGCU- -5'
19268 3' -50.2 NC_004685.1 + 68251 0.94 0.043315
Target:  5'- cGAAACGAUguCGCCCAAUCUGCUCGAg -3'
miRNA:   3'- -CUUUGCUAacGCGGGUUAGACGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.