miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19269 5' -55.8 NC_004685.1 + 11553 0.66 0.716808
Target:  5'- uGCGcugCGCUGGGCaucgugucGGCUGUCCACgGCa -3'
miRNA:   3'- -CGUa--GCGGCUUGa-------CCGGUAGGUGgUG- -5'
19269 5' -55.8 NC_004685.1 + 1276 0.66 0.716808
Target:  5'- gGCAUCGCC-AGCUcGGCCAcggCAUCAg -3'
miRNA:   3'- -CGUAGCGGcUUGA-CCGGUag-GUGGUg -5'
19269 5' -55.8 NC_004685.1 + 19202 0.66 0.713647
Target:  5'- cGCAcgCGCCGAccagcucgacgcgcACUGGCUgaccagccCCGCCAUc -3'
miRNA:   3'- -CGUa-GCGGCU--------------UGACCGGua------GGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 25795 0.67 0.706244
Target:  5'- uGC-UCGCCGGGCagcggcggugGGCCGgucagCGCCGCg -3'
miRNA:   3'- -CGuAGCGGCUUGa---------CCGGUag---GUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 7918 0.67 0.706244
Target:  5'- ---cCGCCGAGauuucuucCUGGCCAUCaCGCUg- -3'
miRNA:   3'- cguaGCGGCUU--------GACCGGUAG-GUGGug -5'
19269 5' -55.8 NC_004685.1 + 8687 0.67 0.706244
Target:  5'- uGCAUCGCCGGcAC-GGCCugcgugGUCgACC-Cg -3'
miRNA:   3'- -CGUAGCGGCU-UGaCCGG------UAGgUGGuG- -5'
19269 5' -55.8 NC_004685.1 + 24049 0.67 0.706244
Target:  5'- gGCAgguacaCGCCGAAgUaGCCGagCGCCGCg -3'
miRNA:   3'- -CGUa-----GCGGCUUgAcCGGUagGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 8628 0.67 0.706244
Target:  5'- cCAUCGgCGAcauCgaGGUCAUCCAgCCGCa -3'
miRNA:   3'- cGUAGCgGCUu--Ga-CCGGUAGGU-GGUG- -5'
19269 5' -55.8 NC_004685.1 + 3977 0.67 0.695611
Target:  5'- gGCGUCGCUGGuaUGaGCC-UUCACCAa -3'
miRNA:   3'- -CGUAGCGGCUugAC-CGGuAGGUGGUg -5'
19269 5' -55.8 NC_004685.1 + 2349 0.67 0.695611
Target:  5'- aCGUCGCCGAGgUugggcaccccgGGCCAgcguucggCCAgCACg -3'
miRNA:   3'- cGUAGCGGCUUgA-----------CCGGUa-------GGUgGUG- -5'
19269 5' -55.8 NC_004685.1 + 21411 0.67 0.695611
Target:  5'- gGCAUgGgCCGu-CUGGUCAUcgCCAUCGCa -3'
miRNA:   3'- -CGUAgC-GGCuuGACCGGUA--GGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 30991 0.67 0.689201
Target:  5'- uGUAUgCGCCGGgugaGCUGGUCcccuccaggacgcCCACCACg -3'
miRNA:   3'- -CGUA-GCGGCU----UGACCGGua-----------GGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 18009 0.67 0.684918
Target:  5'- cGCAUCGgCGAcgaagGCgcGGCCAacaugCUGCCGCg -3'
miRNA:   3'- -CGUAGCgGCU-----UGa-CCGGUa----GGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 33675 0.67 0.684918
Target:  5'- gGCGUucagCGCgGAGCUGGCCuacuucGUCgACgGCg -3'
miRNA:   3'- -CGUA----GCGgCUUGACCGG------UAGgUGgUG- -5'
19269 5' -55.8 NC_004685.1 + 9200 0.67 0.684918
Target:  5'- uGCGagGUCG-AUUGGCCAUgcgaCACCGCc -3'
miRNA:   3'- -CGUagCGGCuUGACCGGUAg---GUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 14527 0.67 0.678477
Target:  5'- cGCG-CGCCGcGCUGGugcucgacaugagccCCGaCCGCCGCc -3'
miRNA:   3'- -CGUaGCGGCuUGACC---------------GGUaGGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 40469 0.67 0.674176
Target:  5'- ---aCGCCGAAcCUGGCg--CUGCCGCa -3'
miRNA:   3'- cguaGCGGCUU-GACCGguaGGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 32245 0.67 0.674176
Target:  5'- uCcgCGCUGAACgcGGCCGcgUCgGCCGCc -3'
miRNA:   3'- cGuaGCGGCUUGa-CCGGU--AGgUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 15567 0.67 0.674176
Target:  5'- aGCAUCccugaucuGCCGAACgacaacGGCCccGUCgACUACa -3'
miRNA:   3'- -CGUAG--------CGGCUUGa-----CCGG--UAGgUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 43877 0.67 0.674176
Target:  5'- cGCggCGCUG-ACcGGCCcaCCGCCGCu -3'
miRNA:   3'- -CGuaGCGGCuUGaCCGGuaGGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.