miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1927 3' -54.7 NC_001347.2 + 65860 0.66 0.980645
Target:  5'- cGCCAGcGGCUGGccuucggcacGCUGGcgGGCCGaCCGc -3'
miRNA:   3'- -CGGUCuCCGAUU----------CGGCU--UUGGCaGGC- -5'
1927 3' -54.7 NC_001347.2 + 189342 0.66 0.980645
Target:  5'- aGUCAGAcGCccgagcAGUCGAcGCCGUCCa -3'
miRNA:   3'- -CGGUCUcCGau----UCGGCUuUGGCAGGc -5'
1927 3' -54.7 NC_001347.2 + 30592 0.66 0.980645
Target:  5'- cGCCGGGcGGCUuccugcGGCCG--GCCGcggugCCGg -3'
miRNA:   3'- -CGGUCU-CCGAu-----UCGGCuuUGGCa----GGC- -5'
1927 3' -54.7 NC_001347.2 + 134354 0.66 0.980645
Target:  5'- gGCCAGGGGgUA--CCGAGGCgGUgcCCGc -3'
miRNA:   3'- -CGGUCUCCgAUucGGCUUUGgCA--GGC- -5'
1927 3' -54.7 NC_001347.2 + 85958 0.66 0.979368
Target:  5'- cGCCGGcgcgcgaacccguguAGuGC-GAGCCGccgccacccGAACCGUCCGc -3'
miRNA:   3'- -CGGUC---------------UC-CGaUUCGGC---------UUUGGCAGGC- -5'
1927 3' -54.7 NC_001347.2 + 113641 0.66 0.978483
Target:  5'- gGCUGGAGaGCgagAGGCCGGcguAGCUG-CCGc -3'
miRNA:   3'- -CGGUCUC-CGa--UUCGGCU---UUGGCaGGC- -5'
1927 3' -54.7 NC_001347.2 + 14019 0.66 0.973371
Target:  5'- gGCCGG-GGCUGugaaccgcucaguGGCUcGGACCG-CCGg -3'
miRNA:   3'- -CGGUCuCCGAU-------------UCGGcUUUGGCaGGC- -5'
1927 3' -54.7 NC_001347.2 + 163613 0.66 0.970931
Target:  5'- gGCCAGugucAGcGCcGAGCCGcgGCUGcCCGg -3'
miRNA:   3'- -CGGUC----UC-CGaUUCGGCuuUGGCaGGC- -5'
1927 3' -54.7 NC_001347.2 + 21411 0.66 0.970931
Target:  5'- aGCUGGuGGCUcauGCCGccACCGguggCCGa -3'
miRNA:   3'- -CGGUCuCCGAuu-CGGCuuUGGCa---GGC- -5'
1927 3' -54.7 NC_001347.2 + 1998 0.67 0.968035
Target:  5'- cGCCAGcGGCgagcggcacgGAGaCgGAGGCCG-CCGg -3'
miRNA:   3'- -CGGUCuCCGa---------UUC-GgCUUUGGCaGGC- -5'
1927 3' -54.7 NC_001347.2 + 59 0.67 0.968035
Target:  5'- gGCCGGguGGGUguguGCCGGGugUGUCgCGg -3'
miRNA:   3'- -CGGUC--UCCGauu-CGGCUUugGCAG-GC- -5'
1927 3' -54.7 NC_001347.2 + 13757 0.67 0.961642
Target:  5'- aGCCAGAuGGCgacgGAcGUCGGGACCGaCgGa -3'
miRNA:   3'- -CGGUCU-CCGa---UU-CGGCUUUGGCaGgC- -5'
1927 3' -54.7 NC_001347.2 + 66092 0.67 0.958134
Target:  5'- uCCGGAGGCUGucagagcGCCGGGAgCaUCUGg -3'
miRNA:   3'- cGGUCUCCGAUu------CGGCUUUgGcAGGC- -5'
1927 3' -54.7 NC_001347.2 + 51481 0.67 0.954413
Target:  5'- cGgUAGAGGCUu-GCgGAAACCacGUCCu -3'
miRNA:   3'- -CgGUCUCCGAuuCGgCUUUGG--CAGGc -5'
1927 3' -54.7 NC_001347.2 + 110119 0.68 0.950474
Target:  5'- cGUCGGAagcGGCcgcgaucagcgAGGCCGAAGCCG-CCa -3'
miRNA:   3'- -CGGUCU---CCGa----------UUCGGCUUUGGCaGGc -5'
1927 3' -54.7 NC_001347.2 + 135450 0.68 0.950068
Target:  5'- cGCCgAGAGG--GAGCCGccgcgagacccggAAGCCGUCgCGg -3'
miRNA:   3'- -CGG-UCUCCgaUUCGGC-------------UUUGGCAG-GC- -5'
1927 3' -54.7 NC_001347.2 + 27137 0.68 0.941931
Target:  5'- gGCCuuauGuGGCUGcGCCGuuuuGCUGUCCu -3'
miRNA:   3'- -CGGu---CuCCGAUuCGGCuu--UGGCAGGc -5'
1927 3' -54.7 NC_001347.2 + 150159 0.68 0.932485
Target:  5'- uGCCGaGGGCcgcgcccaggUAGGCCGuuACUGUCUGc -3'
miRNA:   3'- -CGGUcUCCG----------AUUCGGCuuUGGCAGGC- -5'
1927 3' -54.7 NC_001347.2 + 6280 0.69 0.924272
Target:  5'- aCCGGAGGaagAGGCCGAGgaacccgaggaauacGCCGUaCCc -3'
miRNA:   3'- cGGUCUCCga-UUCGGCUU---------------UGGCA-GGc -5'
1927 3' -54.7 NC_001347.2 + 90544 0.69 0.916605
Target:  5'- gGCCGGAGaCUGcGCCGAcagcucGACCaUCCGu -3'
miRNA:   3'- -CGGUCUCcGAUuCGGCU------UUGGcAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.