Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1927 | 5' | -50.1 | NC_001347.2 | + | 40437 | 0.66 | 0.999292 |
|
Target: 5'- gGGCcguaaGCGuGUUgugUCCGACgcuGCCUg- -3' miRNA: 3'- -CCG-----CGCuCAAa--AGGCUGaauCGGAaa -5' |
|||||||
| 1927 | 5' | -50.1 | NC_001347.2 | + | 78609 | 0.66 | 0.999133 |
|
Target: 5'- cGGCGCGAGgacUCCaug--AGCCUg- -3' miRNA: 3'- -CCGCGCUCaaaAGGcugaaUCGGAaa -5' |
|||||||
| 1927 | 5' | -50.1 | NC_001347.2 | + | 182203 | 0.66 | 0.998719 |
|
Target: 5'- gGGUGCGGGUgg-CgGGCUgcgucGCCUUc -3' miRNA: 3'- -CCGCGCUCAaaaGgCUGAau---CGGAAa -5' |
|||||||
| 1927 | 5' | -50.1 | NC_001347.2 | + | 135945 | 0.66 | 0.99867 |
|
Target: 5'- cGGUGCGGGggucccagcCCGGCcgGGCCg-- -3' miRNA: 3'- -CCGCGCUCaaaa-----GGCUGaaUCGGaaa -5' |
|||||||
| 1927 | 5' | -50.1 | NC_001347.2 | + | 185742 | 0.67 | 0.997379 |
|
Target: 5'- uGGaCGCG-GUUUUCUGGCc--GCCUUUc -3' miRNA: 3'- -CC-GCGCuCAAAAGGCUGaauCGGAAA- -5' |
|||||||
| 1927 | 5' | -50.1 | NC_001347.2 | + | 95294 | 0.68 | 0.995738 |
|
Target: 5'- cGGCGCGGGc---CUGACUccucGGCCUg- -3' miRNA: 3'- -CCGCGCUCaaaaGGCUGAa---UCGGAaa -5' |
|||||||
| 1927 | 5' | -50.1 | NC_001347.2 | + | 188687 | 0.68 | 0.994237 |
|
Target: 5'- gGGCGaCGAGgaUUCCGAC--AGCUc-- -3' miRNA: 3'- -CCGC-GCUCaaAAGGCUGaaUCGGaaa -5' |
|||||||
| 1927 | 5' | -50.1 | NC_001347.2 | + | 185487 | 0.68 | 0.992336 |
|
Target: 5'- uGGCGCGcAGgggcUCCGACgUGGCgUUa -3' miRNA: 3'- -CCGCGC-UCaaa-AGGCUGaAUCGgAAa -5' |
|||||||
| 1927 | 5' | -50.1 | NC_001347.2 | + | 116203 | 0.71 | 0.965462 |
|
Target: 5'- cGGCGCGAucgg-CCGACauagagUAGCCUUc -3' miRNA: 3'- -CCGCGCUcaaaaGGCUGa-----AUCGGAAa -5' |
|||||||
| 1927 | 5' | -50.1 | NC_001347.2 | + | 36410 | 0.71 | 0.958398 |
|
Target: 5'- uGGCGUGcuGUUUUCCGugUU-GCCg-- -3' miRNA: 3'- -CCGCGCu-CAAAAGGCugAAuCGGaaa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home