miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19270 3' -65.5 NC_004685.1 + 17076 0.66 0.29183
Target:  5'- gAGCuGGaGCGCuGGCCcauCGGCCUGGuCCa -3'
miRNA:   3'- gUCG-CC-CGUG-CCGGc--GCCGGACU-GGc -5'
19270 3' -65.5 NC_004685.1 + 21739 0.66 0.291158
Target:  5'- aCAGCGugauGCACGG-CGaCGGCCUcauuaucgagcugGACCGg -3'
miRNA:   3'- -GUCGCc---CGUGCCgGC-GCCGGA-------------CUGGC- -5'
19270 3' -65.5 NC_004685.1 + 20341 0.66 0.285162
Target:  5'- aCGGCGGcgGCGaaccgcugcccGCCGCGGCgUGAUCGc -3'
miRNA:   3'- -GUCGCCcgUGC-----------CGGCGCCGgACUGGC- -5'
19270 3' -65.5 NC_004685.1 + 23584 0.66 0.285162
Target:  5'- cCAGCaaGGGuCGCGGCCcccGCGGUCgaugGAUCu -3'
miRNA:   3'- -GUCG--CCC-GUGCCGG---CGCCGGa---CUGGc -5'
19270 3' -65.5 NC_004685.1 + 32801 0.66 0.285162
Target:  5'- -cGUGccCGCGGCCGCGGCCgacgauguuGCCGg -3'
miRNA:   3'- guCGCccGUGCCGGCGCCGGac-------UGGC- -5'
19270 3' -65.5 NC_004685.1 + 31228 0.66 0.285162
Target:  5'- uGGCaaGGGCGuCGGCuCG-GGCCUGGUCGg -3'
miRNA:   3'- gUCG--CCCGU-GCCG-GCgCCGGACUGGC- -5'
19270 3' -65.5 NC_004685.1 + 4315 0.67 0.278615
Target:  5'- uCGGCGGGCcucuccGCGaGCCGCaGGgUUGAUCc -3'
miRNA:   3'- -GUCGCCCG------UGC-CGGCG-CCgGACUGGc -5'
19270 3' -65.5 NC_004685.1 + 29700 0.67 0.278615
Target:  5'- gUAGCGGGUcCGGUgCGCcagggucagGGUCUGGCCc -3'
miRNA:   3'- -GUCGCCCGuGCCG-GCG---------CCGGACUGGc -5'
19270 3' -65.5 NC_004685.1 + 30115 0.67 0.278615
Target:  5'- cCGGUGGGgGCaGuGUCGCGGCCgcacucGGCCc -3'
miRNA:   3'- -GUCGCCCgUG-C-CGGCGCCGGa-----CUGGc -5'
19270 3' -65.5 NC_004685.1 + 43061 0.67 0.278615
Target:  5'- gCGGCGGuGCuc-GCCGCGGUC-GGCUGg -3'
miRNA:   3'- -GUCGCC-CGugcCGGCGCCGGaCUGGC- -5'
19270 3' -65.5 NC_004685.1 + 16719 0.67 0.278615
Target:  5'- aCAGUGaGGC--GGCCGCGGUgcggCUGuCCGg -3'
miRNA:   3'- -GUCGC-CCGugCCGGCGCCG----GACuGGC- -5'
19270 3' -65.5 NC_004685.1 + 16028 0.67 0.274103
Target:  5'- gAGCugaagaaGGGCGCGcGCCgcgaauaccgcaucgGCGGCCUGAacgucaCCGa -3'
miRNA:   3'- gUCG-------CCCGUGC-CGG---------------CGCCGGACU------GGC- -5'
19270 3' -65.5 NC_004685.1 + 17981 0.67 0.272188
Target:  5'- -cGCGGGC-CGGCaGUGGCU--GCCGc -3'
miRNA:   3'- guCGCCCGuGCCGgCGCCGGacUGGC- -5'
19270 3' -65.5 NC_004685.1 + 57669 0.67 0.272188
Target:  5'- aCAGUGaGCACGGCCaGCGGgUUgGugCGg -3'
miRNA:   3'- -GUCGCcCGUGCCGG-CGCCgGA-CugGC- -5'
19270 3' -65.5 NC_004685.1 + 6687 0.67 0.26588
Target:  5'- -cGcCGGGCAgCuuCCGCgugGGCCUGACCGa -3'
miRNA:   3'- guC-GCCCGU-GccGGCG---CCGGACUGGC- -5'
19270 3' -65.5 NC_004685.1 + 65242 0.67 0.259692
Target:  5'- -cGCcgGGGCGCccgaaCGCGGCCUGACgCGa -3'
miRNA:   3'- guCG--CCCGUGccg--GCGCCGGACUG-GC- -5'
19270 3' -65.5 NC_004685.1 + 9550 0.67 0.253621
Target:  5'- gCGGCGauGGcCACGGCgCGCGaCCUGAUCc -3'
miRNA:   3'- -GUCGC--CC-GUGCCG-GCGCcGGACUGGc -5'
19270 3' -65.5 NC_004685.1 + 10460 0.67 0.253621
Target:  5'- aCAGCGGGUggccuauCGGgaCCGCGGCaUGuuGCCGg -3'
miRNA:   3'- -GUCGCCCGu------GCC--GGCGCCGgAC--UGGC- -5'
19270 3' -65.5 NC_004685.1 + 63357 0.67 0.253621
Target:  5'- gCAGCGGGCGCaGUUccagGCGGCgUaGCCGc -3'
miRNA:   3'- -GUCGCCCGUGcCGG----CGCCGgAcUGGC- -5'
19270 3' -65.5 NC_004685.1 + 57591 0.67 0.253621
Target:  5'- -uGgGGGCAcuCGGCgGUGcGCUUGGCCa -3'
miRNA:   3'- guCgCCCGU--GCCGgCGC-CGGACUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.