miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19271 3' -61.3 NC_004685.1 + 45739 0.66 0.475623
Target:  5'- aCGGcagcggGUCGCCggGGCGGCG-CGUg -3'
miRNA:   3'- -GCCaua---CGGCGGgaCCGCCGCuGCAa -5'
19271 3' -61.3 NC_004685.1 + 29070 0.66 0.466037
Target:  5'- ---cGUGCUGaCCgCUGGCgcGGCGGCGUUc -3'
miRNA:   3'- gccaUACGGC-GG-GACCG--CCGCUGCAA- -5'
19271 3' -61.3 NC_004685.1 + 61941 0.66 0.466037
Target:  5'- gCGGUcGUGCaCGUCCUGGCuGCGGg--- -3'
miRNA:   3'- -GCCA-UACG-GCGGGACCGcCGCUgcaa -5'
19271 3' -61.3 NC_004685.1 + 53819 0.66 0.466037
Target:  5'- gGGUGUGuaGCCCUccugaaggucGGcCGGUGGCGc- -3'
miRNA:   3'- gCCAUACggCGGGA----------CC-GCCGCUGCaa -5'
19271 3' -61.3 NC_004685.1 + 40126 0.66 0.456552
Target:  5'- gCGGaaguUGUCGgUCaUGGCGGCGAUGUc -3'
miRNA:   3'- -GCCau--ACGGCgGG-ACCGCCGCUGCAa -5'
19271 3' -61.3 NC_004685.1 + 59461 0.66 0.447172
Target:  5'- aCGGUcaGCuCGCCgUuggacagcucgGGCGGCGGCGg- -3'
miRNA:   3'- -GCCAuaCG-GCGGgA-----------CCGCCGCUGCaa -5'
19271 3' -61.3 NC_004685.1 + 402 0.66 0.447172
Target:  5'- -----aGCUGCUCguaGGCGGCGGCGa- -3'
miRNA:   3'- gccauaCGGCGGGa--CCGCCGCUGCaa -5'
19271 3' -61.3 NC_004685.1 + 37973 0.66 0.4379
Target:  5'- aGGcGUGgaugagauucgcCCGCgCCUGGUGGUGACGc- -3'
miRNA:   3'- gCCaUAC------------GGCG-GGACCGCCGCUGCaa -5'
19271 3' -61.3 NC_004685.1 + 42821 0.67 0.410762
Target:  5'- cCGGccagGUCGCCCUGuuugcgcugaGCGGCGGCa-- -3'
miRNA:   3'- -GCCaua-CGGCGGGAC----------CGCCGCUGcaa -5'
19271 3' -61.3 NC_004685.1 + 59562 0.67 0.401951
Target:  5'- gGGUcgcagcAUGuuGCgCaGGCGGCGGCGg- -3'
miRNA:   3'- gCCA------UACggCGgGaCCGCCGCUGCaa -5'
19271 3' -61.3 NC_004685.1 + 64182 0.67 0.37625
Target:  5'- -----gGCCGCUC-GGCGGCGAUGg- -3'
miRNA:   3'- gccauaCGGCGGGaCCGCCGCUGCaa -5'
19271 3' -61.3 NC_004685.1 + 17676 0.68 0.367933
Target:  5'- cCGGg--GCCGCCCcGGCGuCGGCa-- -3'
miRNA:   3'- -GCCauaCGGCGGGaCCGCcGCUGcaa -5'
19271 3' -61.3 NC_004685.1 + 53587 0.68 0.367933
Target:  5'- uCGGcgGUGuuGCCCUGGUaGCGaAUGUg -3'
miRNA:   3'- -GCCa-UACggCGGGACCGcCGC-UGCAa -5'
19271 3' -61.3 NC_004685.1 + 26952 0.68 0.359744
Target:  5'- gGGUGUGCaCGUCgCggaacgaGGUGGCGGCGa- -3'
miRNA:   3'- gCCAUACG-GCGG-Ga------CCGCCGCUGCaa -5'
19271 3' -61.3 NC_004685.1 + 32751 0.68 0.359744
Target:  5'- uGGUGgaccgGCCGCCagguUGGUGGCGAa--- -3'
miRNA:   3'- gCCAUa----CGGCGGg---ACCGCCGCUgcaa -5'
19271 3' -61.3 NC_004685.1 + 62624 0.68 0.351682
Target:  5'- aGGUcgGCUgucgugucgGCCCUGGCGuugcgcagcGCGGCGa- -3'
miRNA:   3'- gCCAuaCGG---------CGGGACCGC---------CGCUGCaa -5'
19271 3' -61.3 NC_004685.1 + 39214 0.68 0.351682
Target:  5'- -----cGCCG-CCUGGCGGCGGCu-- -3'
miRNA:   3'- gccauaCGGCgGGACCGCCGCUGcaa -5'
19271 3' -61.3 NC_004685.1 + 36397 0.68 0.326754
Target:  5'- uGGgcaacuuccCCGCCCUGGUGcGCGGCGa- -3'
miRNA:   3'- gCCauac-----GGCGGGACCGC-CGCUGCaa -5'
19271 3' -61.3 NC_004685.1 + 37517 0.69 0.32073
Target:  5'- aGGUGUgGCgCGCUgUGGUGGCcGCGUUc -3'
miRNA:   3'- gCCAUA-CG-GCGGgACCGCCGcUGCAA- -5'
19271 3' -61.3 NC_004685.1 + 53221 0.69 0.319983
Target:  5'- aGGaUGUGCCGCaCCaucagguagguggUGGCGGCcuGGCGUc -3'
miRNA:   3'- gCC-AUACGGCG-GG-------------ACCGCCG--CUGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.