miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19272 5' -58.2 NC_004685.1 + 60341 0.67 0.603691
Target:  5'- uGCUGCGGcCGCGcCGuCCagaaGUcCUGCu -3'
miRNA:   3'- -CGACGCCaGCGCuGCuGGg---CGuGAUG- -5'
19272 5' -58.2 NC_004685.1 + 28072 0.67 0.603691
Target:  5'- gGCUGaGGUCGC--CGACgCCGaGCUGCa -3'
miRNA:   3'- -CGACgCCAGCGcuGCUG-GGCgUGAUG- -5'
19272 5' -58.2 NC_004685.1 + 13688 0.67 0.593169
Target:  5'- gGCcGCGGgUGCGGCGcACCUGCAacgaGCg -3'
miRNA:   3'- -CGaCGCCaGCGCUGC-UGGGCGUga--UG- -5'
19272 5' -58.2 NC_004685.1 + 67105 0.67 0.582677
Target:  5'- gGCUGUcGUUGCGACGcUCgGCGCgGCg -3'
miRNA:   3'- -CGACGcCAGCGCUGCuGGgCGUGaUG- -5'
19272 5' -58.2 NC_004685.1 + 66246 0.67 0.582677
Target:  5'- --cGCGGUCuGCuguGCGGCCCGUGCa-- -3'
miRNA:   3'- cgaCGCCAG-CGc--UGCUGGGCGUGaug -5'
19272 5' -58.2 NC_004685.1 + 2662 0.67 0.572223
Target:  5'- -gUGCGGgucgUCGCGACcgcagcACCCGCugUGu -3'
miRNA:   3'- cgACGCC----AGCGCUGc-----UGGGCGugAUg -5'
19272 5' -58.2 NC_004685.1 + 41587 0.67 0.561813
Target:  5'- aGCUGCuG-CGCGGCGAa-CGCcuGCUGCa -3'
miRNA:   3'- -CGACGcCaGCGCUGCUggGCG--UGAUG- -5'
19272 5' -58.2 NC_004685.1 + 63102 0.67 0.555593
Target:  5'- cGCUGgGGUCGCgcucgucgguggcgaGcACGAUgCGCACcUGCu -3'
miRNA:   3'- -CGACgCCAGCG---------------C-UGCUGgGCGUG-AUG- -5'
19272 5' -58.2 NC_004685.1 + 66378 0.67 0.551456
Target:  5'- uUUGCcGUCGuCGACGAUgCGCACacgGCg -3'
miRNA:   3'- cGACGcCAGC-GCUGCUGgGCGUGa--UG- -5'
19272 5' -58.2 NC_004685.1 + 193 0.67 0.551456
Target:  5'- cGC-GCGGguuucggCGCGACGAgUgCGCGCUGg -3'
miRNA:   3'- -CGaCGCCa------GCGCUGCU-GgGCGUGAUg -5'
19272 5' -58.2 NC_004685.1 + 36371 0.68 0.541158
Target:  5'- --cGCGGUCGCcgcgcccgacGGCGGCCUGgGCaACu -3'
miRNA:   3'- cgaCGCCAGCG----------CUGCUGGGCgUGaUG- -5'
19272 5' -58.2 NC_004685.1 + 50883 0.68 0.541158
Target:  5'- --gGCGGUUGCGcGCgGugCCGCGCg-- -3'
miRNA:   3'- cgaCGCCAGCGC-UG-CugGGCGUGaug -5'
19272 5' -58.2 NC_004685.1 + 49888 0.68 0.523804
Target:  5'- cGCaGCGGUCGCGGgaucuugcgauucUGGCUCucgaugccguugaagGCGCUGCg -3'
miRNA:   3'- -CGaCGCCAGCGCU-------------GCUGGG---------------CGUGAUG- -5'
19272 5' -58.2 NC_004685.1 + 12041 0.68 0.520764
Target:  5'- aGCUcGCGGUCaacGCGGCCCGCGagGCg -3'
miRNA:   3'- -CGA-CGCCAGcgcUGCUGGGCGUgaUG- -5'
19272 5' -58.2 NC_004685.1 + 2811 0.68 0.520764
Target:  5'- cGCUGUGGgacugcCGCaucGACGGCaaCCGCGuCUGCg -3'
miRNA:   3'- -CGACGCCa-----GCG---CUGCUG--GGCGU-GAUG- -5'
19272 5' -58.2 NC_004685.1 + 15624 0.68 0.51773
Target:  5'- cGCUcCGaGUCGCGACGgcgagccaucGCCCGCGgcauccccgcacacCUGCa -3'
miRNA:   3'- -CGAcGC-CAGCGCUGC----------UGGGCGU--------------GAUG- -5'
19272 5' -58.2 NC_004685.1 + 21302 0.68 0.509675
Target:  5'- aGCUGUGGUgGCGcggcgagGCGAugcgcuucgucaCCCGCACccugUGCg -3'
miRNA:   3'- -CGACGCCAgCGC-------UGCU------------GGGCGUG----AUG- -5'
19272 5' -58.2 NC_004685.1 + 62187 0.68 0.507669
Target:  5'- gGCuUGCGGcccgCGCcuuccacccacaugGACGAgCCGUGCUGCa -3'
miRNA:   3'- -CG-ACGCCa---GCG--------------CUGCUgGGCGUGAUG- -5'
19272 5' -58.2 NC_004685.1 + 56167 0.68 0.500676
Target:  5'- cGgUGCcucGUCGgGGCGGuCCCGgCGCUGCa -3'
miRNA:   3'- -CgACGc--CAGCgCUGCU-GGGC-GUGAUG- -5'
19272 5' -58.2 NC_004685.1 + 32280 0.68 0.490761
Target:  5'- cGCggGCGGUccugguggCGCGGCGACCgcaGCGgccCUGCa -3'
miRNA:   3'- -CGa-CGCCA--------GCGCUGCUGGg--CGU---GAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.