miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19273 3' -57.3 NC_004685.1 + 32634 0.66 0.691985
Target:  5'- ---gUGGGUGGCGgaagCGGUgGUGGUGAa -3'
miRNA:   3'- accgACCCACUGCaa--GCCG-CGCUACU- -5'
19273 3' -57.3 NC_004685.1 + 62260 0.66 0.670835
Target:  5'- gGGCggGGaGUGAuaCGcgCGGCGCGcUGGc -3'
miRNA:   3'- aCCGa-CC-CACU--GCaaGCCGCGCuACU- -5'
19273 3' -57.3 NC_004685.1 + 33180 0.66 0.660204
Target:  5'- cGGCcgGuGGUgGGCGc-CGGUGCGGUGGa -3'
miRNA:   3'- aCCGa-C-CCA-CUGCaaGCCGCGCUACU- -5'
19273 3' -57.3 NC_004685.1 + 46671 0.66 0.659139
Target:  5'- gUGGC-GGGUGGCaUcccaccgggccuaUCGGCGgCGAUGc -3'
miRNA:   3'- -ACCGaCCCACUGcA-------------AGCCGC-GCUACu -5'
19273 3' -57.3 NC_004685.1 + 7362 0.67 0.617528
Target:  5'- aGGCgUGGGUGA---UCGGUGCccacGAUGGu -3'
miRNA:   3'- aCCG-ACCCACUgcaAGCCGCG----CUACU- -5'
19273 3' -57.3 NC_004685.1 + 45604 0.67 0.596225
Target:  5'- gGGgUGGGUGcUGUUCGuCGCGAUc- -3'
miRNA:   3'- aCCgACCCACuGCAAGCcGCGCUAcu -5'
19273 3' -57.3 NC_004685.1 + 35936 0.68 0.564507
Target:  5'- cGGCUGGGUgucggcgaucguGACGUUCcgcaacGGCGaGGUGu -3'
miRNA:   3'- aCCGACCCA------------CUGCAAG------CCGCgCUACu -5'
19273 3' -57.3 NC_004685.1 + 15268 0.68 0.561357
Target:  5'- gGGCUGucgccgaucgagaaGGUGAUGaUCGGUGaGAUGAc -3'
miRNA:   3'- aCCGAC--------------CCACUGCaAGCCGCgCUACU- -5'
19273 3' -57.3 NC_004685.1 + 15181 0.68 0.554026
Target:  5'- aGGUUGGGcacaucugccaUGACGaggCGGCauuacGCGGUGAg -3'
miRNA:   3'- aCCGACCC-----------ACUGCaa-GCCG-----CGCUACU- -5'
19273 3' -57.3 NC_004685.1 + 45744 0.68 0.522963
Target:  5'- gGGCUGGGgGugGUc---CGCGAUGAg -3'
miRNA:   3'- aCCGACCCaCugCAagccGCGCUACU- -5'
19273 3' -57.3 NC_004685.1 + 15156 0.69 0.512755
Target:  5'- gGuGCUGGGcuUGACGcUgGGUGCGAUcGAg -3'
miRNA:   3'- aC-CGACCC--ACUGCaAgCCGCGCUA-CU- -5'
19273 3' -57.3 NC_004685.1 + 43039 0.7 0.453423
Target:  5'- cGGCUGuGGUGugcuCG-UCGGUGCGgcGGu -3'
miRNA:   3'- aCCGAC-CCACu---GCaAGCCGCGCuaCU- -5'
19273 3' -57.3 NC_004685.1 + 47588 0.71 0.371999
Target:  5'- uUGGUggucGGUG-CGUUCGGUGCgGAUGAc -3'
miRNA:   3'- -ACCGac--CCACuGCAAGCCGCG-CUACU- -5'
19273 3' -57.3 NC_004685.1 + 21599 0.72 0.315922
Target:  5'- cGGCUGGGUcggcACGUUCGGUGCc---- -3'
miRNA:   3'- aCCGACCCAc---UGCAAGCCGCGcuacu -5'
19273 3' -57.3 NC_004685.1 + 41756 0.74 0.266463
Target:  5'- aGGCaucGGUGGCGUUgaCGGCGCGGUcGAg -3'
miRNA:   3'- aCCGac-CCACUGCAA--GCCGCGCUA-CU- -5'
19273 3' -57.3 NC_004685.1 + 66537 1.09 0.000856
Target:  5'- aUGGCUGGGUGACGUUCGGCGCGAUGAg -3'
miRNA:   3'- -ACCGACCCACUGCAAGCCGCGCUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.