miRNA display CGI


Results 21 - 40 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19274 3' -61.6 NC_004685.1 + 55428 0.67 0.409927
Target:  5'- ---cGCCaGACUCGACuCCGacaCCGCCUu -3'
miRNA:   3'- uugaUGG-CUGAGCUG-GGCg--GGCGGGc -5'
19274 3' -61.6 NC_004685.1 + 11728 0.67 0.409927
Target:  5'- uGAC-ACCGcGCaCGGCCCGCUgUGCCCGa -3'
miRNA:   3'- -UUGaUGGC-UGaGCUGGGCGG-GCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 1485 0.67 0.409927
Target:  5'- cGCUagGCCGACguagaGaACCCGCUgGCCCc -3'
miRNA:   3'- uUGA--UGGCUGag---C-UGGGCGGgCGGGc -5'
19274 3' -61.6 NC_004685.1 + 57256 0.68 0.375804
Target:  5'- gGGCUGCCGccuuCUCGGCgaUgGCCCGCaCCu -3'
miRNA:   3'- -UUGAUGGCu---GAGCUG--GgCGGGCG-GGc -5'
19274 3' -61.6 NC_004685.1 + 2604 0.68 0.374975
Target:  5'- cGGCaUACCG-CUCGGCCUGCUCggcagcgacggcuGCCCa -3'
miRNA:   3'- -UUG-AUGGCuGAGCUGGGCGGG-------------CGGGc -5'
19274 3' -61.6 NC_004685.1 + 260 0.68 0.367578
Target:  5'- cGAC-ACCGACUCuuGCUCGUCUGCgCCGg -3'
miRNA:   3'- -UUGaUGGCUGAGc-UGGGCGGGCG-GGC- -5'
19274 3' -61.6 NC_004685.1 + 43688 0.68 0.359476
Target:  5'- cGGCgACCGGCUgCGcACCCuGCCCGgCUGg -3'
miRNA:   3'- -UUGaUGGCUGA-GC-UGGG-CGGGCgGGC- -5'
19274 3' -61.6 NC_004685.1 + 62734 0.68 0.3515
Target:  5'- uGGCUGCgGGCUUGACCgGCUCggggGCCaCGg -3'
miRNA:   3'- -UUGAUGgCUGAGCUGGgCGGG----CGG-GC- -5'
19274 3' -61.6 NC_004685.1 + 66450 0.68 0.343651
Target:  5'- cGAUgguCCGGCcCGACCCcgacCCCGCCCc -3'
miRNA:   3'- -UUGau-GGCUGaGCUGGGc---GGGCGGGc -5'
19274 3' -61.6 NC_004685.1 + 57023 0.68 0.342873
Target:  5'- uGCggGCCGACcuucaccUUGACCCGCCCGgCgGc -3'
miRNA:   3'- uUGa-UGGCUG-------AGCUGGGCGGGCgGgC- -5'
19274 3' -61.6 NC_004685.1 + 5965 0.68 0.335929
Target:  5'- gAGC-GCCGACUaCGAUCCGCgCGUgCGg -3'
miRNA:   3'- -UUGaUGGCUGA-GCUGGGCGgGCGgGC- -5'
19274 3' -61.6 NC_004685.1 + 26451 0.68 0.328334
Target:  5'- cACgagACCGGCgUgGugCUGCCCGCCUc -3'
miRNA:   3'- uUGa--UGGCUG-AgCugGGCGGGCGGGc -5'
19274 3' -61.6 NC_004685.1 + 4164 0.68 0.328334
Target:  5'- gAGCuUGCCGACgacGCCCGCCaGCUCGg -3'
miRNA:   3'- -UUG-AUGGCUGagcUGGGCGGgCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 69006 0.69 0.313527
Target:  5'- cGCUGCCGaaguuuaugcgcGCUgcCGACCCGgCCGCCg- -3'
miRNA:   3'- uUGAUGGC------------UGA--GCUGGGCgGGCGGgc -5'
19274 3' -61.6 NC_004685.1 + 47401 0.69 0.299232
Target:  5'- cGACgaACCGGga-GGCCCGCCCGCCg- -3'
miRNA:   3'- -UUGa-UGGCUgagCUGGGCGGGCGGgc -5'
19274 3' -61.6 NC_004685.1 + 51858 0.69 0.292275
Target:  5'- cGCUcACCGACUUcaGGCCggccagcagcuUGCCCGCCUGa -3'
miRNA:   3'- uUGA-UGGCUGAG--CUGG-----------GCGGGCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 45363 0.69 0.285446
Target:  5'- cGACgucGCCGA----ACCCGCCUGCCCGc -3'
miRNA:   3'- -UUGa--UGGCUgagcUGGGCGGGCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 5607 0.69 0.285446
Target:  5'- ---cACCG-UUCGAUCCGCUCGCCuCGa -3'
miRNA:   3'- uugaUGGCuGAGCUGGGCGGGCGG-GC- -5'
19274 3' -61.6 NC_004685.1 + 30131 0.69 0.285446
Target:  5'- cGCgGCCGcACUCGGCCCGgCaGCCCc -3'
miRNA:   3'- uUGaUGGC-UGAGCUGGGCgGgCGGGc -5'
19274 3' -61.6 NC_004685.1 + 25355 0.7 0.278743
Target:  5'- cGGCcACCGcgUCGACCagggugCGCCCGCCCa -3'
miRNA:   3'- -UUGaUGGCugAGCUGG------GCGGGCGGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.