Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19274 | 5' | -52.3 | NC_004685.1 | + | 66351 | 1.1 | 0.0023 |
Target: 5'- aUCCAGGCGUACACGCGGUUUCAGAACc -3' miRNA: 3'- -AGGUCCGCAUGUGCGCCAAAGUCUUG- -5' |
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19274 | 5' | -52.3 | NC_004685.1 | + | 178 | 0.78 | 0.289528 |
Target: 5'- cCCuugcgcGGCGUGCGCGCGgGUUUCGGcGCg -3' miRNA: 3'- aGGu-----CCGCAUGUGCGC-CAAAGUCuUG- -5' |
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19274 | 5' | -52.3 | NC_004685.1 | + | 10493 | 0.74 | 0.464404 |
Target: 5'- gCCGGGUGUGCugGagugggCGGUcggUCAGGGCa -3' miRNA: 3'- aGGUCCGCAUGugC------GCCAa--AGUCUUG- -5' |
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19274 | 5' | -52.3 | NC_004685.1 | + | 50100 | 0.74 | 0.495115 |
Target: 5'- aCCAGGCGUguugaGCuuGCGGUcgUCAGAc- -3' miRNA: 3'- aGGUCCGCA-----UGugCGCCAa-AGUCUug -5' |
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19274 | 5' | -52.3 | NC_004685.1 | + | 38262 | 0.72 | 0.5897 |
Target: 5'- aCCGGGCGgcaaaccguaggGCACGCGGUcaccgaaguUUcCAGGGCc -3' miRNA: 3'- aGGUCCGCa-----------UGUGCGCCA---------AA-GUCUUG- -5' |
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19274 | 5' | -52.3 | NC_004685.1 | + | 58565 | 0.72 | 0.602936 |
Target: 5'- aCCGGGCGUugaaccuaucGCGCcaagcacgaucGCGGUgUUCAGGGCu -3' miRNA: 3'- aGGUCCGCA----------UGUG-----------CGCCA-AAGUCUUG- -5' |
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19274 | 5' | -52.3 | NC_004685.1 | + | 24026 | 0.72 | 0.613995 |
Target: 5'- gUCGGGCGUuCugGCGGUUgggcggCAGGuACa -3' miRNA: 3'- aGGUCCGCAuGugCGCCAAa-----GUCU-UG- -5' |
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19274 | 5' | -52.3 | NC_004685.1 | + | 39587 | 0.71 | 0.625069 |
Target: 5'- cCCAccGGCGUACguugcgaucgGCGCGGcg-CGGAACa -3' miRNA: 3'- aGGU--CCGCAUG----------UGCGCCaaaGUCUUG- -5' |
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19274 | 5' | -52.3 | NC_004685.1 | + | 28461 | 0.71 | 0.629502 |
Target: 5'- gCCAGGCGUACAUcacagagcaGCGGgUUCuccgcgacaccaggcAGAGCa -3' miRNA: 3'- aGGUCCGCAUGUG---------CGCCaAAG---------------UCUUG- -5' |
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19274 | 5' | -52.3 | NC_004685.1 | + | 64052 | 0.71 | 0.647227 |
Target: 5'- gCCAGGUGUGCAuCGCGGUaccgaugaUCGaggcGAGCg -3' miRNA: 3'- aGGUCCGCAUGU-GCGCCAa-------AGU----CUUG- -5' |
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19274 | 5' | -52.3 | NC_004685.1 | + | 49076 | 0.71 | 0.669329 |
Target: 5'- --gAGGCGUugGCGCGGUcaUAGAu- -3' miRNA: 3'- aggUCCGCAugUGCGCCAaaGUCUug -5' |
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19274 | 5' | -52.3 | NC_004685.1 | + | 37887 | 0.7 | 0.691289 |
Target: 5'- gCCGGGUGUGCACGUGGaugUUgcuGGggUc -3' miRNA: 3'- aGGUCCGCAUGUGCGCCaa-AG---UCuuG- -5' |
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19274 | 5' | -52.3 | NC_004685.1 | + | 63632 | 0.7 | 0.713018 |
Target: 5'- aUCCAGGCGUAC-CGC----UCGGggUa -3' miRNA: 3'- -AGGUCCGCAUGuGCGccaaAGUCuuG- -5' |
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19274 | 5' | -52.3 | NC_004685.1 | + | 3360 | 0.69 | 0.730173 |
Target: 5'- aCCGGGCGgGCGgGCGGgucgagucgguagUUCAGcGCg -3' miRNA: 3'- aGGUCCGCaUGUgCGCCa------------AAGUCuUG- -5' |
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19274 | 5' | -52.3 | NC_004685.1 | + | 1707 | 0.69 | 0.755413 |
Target: 5'- aUCCAcucGGCGaAUGCGgGGUUgacgCGGAGCu -3' miRNA: 3'- -AGGU---CCGCaUGUGCgCCAAa---GUCUUG- -5' |
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19274 | 5' | -52.3 | NC_004685.1 | + | 24315 | 0.69 | 0.775892 |
Target: 5'- cUCguGGCGgGCAgGCGGgUUCGGcGACg -3' miRNA: 3'- -AGguCCGCaUGUgCGCCaAAGUC-UUG- -5' |
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19274 | 5' | -52.3 | NC_004685.1 | + | 47534 | 0.69 | 0.785911 |
Target: 5'- -gUAGGUGaGCGCGCGGUgcCAGGugGCg -3' miRNA: 3'- agGUCCGCaUGUGCGCCAaaGUCU--UG- -5' |
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19274 | 5' | -52.3 | NC_004685.1 | + | 63015 | 0.68 | 0.795768 |
Target: 5'- gCCcGGCGUGgGCGCGGUgUCGa--- -3' miRNA: 3'- aGGuCCGCAUgUGCGCCAaAGUcuug -5' |
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19274 | 5' | -52.3 | NC_004685.1 | + | 37843 | 0.68 | 0.795768 |
Target: 5'- cUUCAGGUggccgaGUACA-GCGGcgUCGGAGCg -3' miRNA: 3'- -AGGUCCG------CAUGUgCGCCaaAGUCUUG- -5' |
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19274 | 5' | -52.3 | NC_004685.1 | + | 30485 | 0.68 | 0.805452 |
Target: 5'- gCCAGGCG-GCGCGUGGagcgUUcCGGggUc -3' miRNA: 3'- aGGUCCGCaUGUGCGCCa---AA-GUCuuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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