Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 19274 | 5' | -52.3 | NC_004685.1 | + | 63632 | 0.7 | 0.713018 |
|
Target: 5'- aUCCAGGCGUAC-CGC----UCGGggUa -3' miRNA: 3'- -AGGUCCGCAUGuGCGccaaAGUCuuG- -5' |
|||||||
| 19274 | 5' | -52.3 | NC_004685.1 | + | 34595 | 0.67 | 0.859335 |
|
Target: 5'- aUCCAGGCGcGCAUGUcagGGUU---GAGCg -3' miRNA: 3'- -AGGUCCGCaUGUGCG---CCAAaguCUUG- -5' |
|||||||
| 19274 | 5' | -52.3 | NC_004685.1 | + | 66393 | 0.66 | 0.897735 |
|
Target: 5'- cCCgAGGCGUAgcCAUGCGaUUcCAGAACc -3' miRNA: 3'- aGG-UCCGCAU--GUGCGCcAAaGUCUUG- -5' |
|||||||
| 19274 | 5' | -52.3 | NC_004685.1 | + | 56968 | 0.66 | 0.904623 |
|
Target: 5'- cUCAGcGCGUGCAC-CGGcUUCGGcGGCu -3' miRNA: 3'- aGGUC-CGCAUGUGcGCCaAAGUC-UUG- -5' |
|||||||
| 19274 | 5' | -52.3 | NC_004685.1 | + | 35104 | 0.66 | 0.911237 |
|
Target: 5'- gCCAGGCGcucgGCAgcgucggcCGCGGUcaUCGGAu- -3' miRNA: 3'- aGGUCCGCa---UGU--------GCGCCAa-AGUCUug -5' |
|||||||
| 19274 | 5' | -52.3 | NC_004685.1 | + | 45518 | 0.66 | 0.911237 |
|
Target: 5'- uUCCAGGCG---ACGCGGcgacUC-GAACa -3' miRNA: 3'- -AGGUCCGCaugUGCGCCaa--AGuCUUG- -5' |
|||||||
| 19274 | 5' | -52.3 | NC_004685.1 | + | 66351 | 1.1 | 0.0023 |
|
Target: 5'- aUCCAGGCGUACACGCGGUUUCAGAACc -3' miRNA: 3'- -AGGUCCGCAUGUGCGCCAAAGUCUUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home