Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19275 | 5' | -58.1 | NC_004685.1 | + | 4709 | 0.69 | 0.407226 |
Target: 5'- uGUGCGGCUac-GCGAUCaucccggccgaGGGGCAUCc -3' miRNA: 3'- -CACGCCGGgcaCGUUAG-----------UCCCGUAGc -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 58321 | 0.69 | 0.407226 |
Target: 5'- -gGuCGGCCCGgccgGCAcagccucgguGUCGGGGCggGUCGc -3' miRNA: 3'- caC-GCCGGGCa---CGU----------UAGUCCCG--UAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 7792 | 0.7 | 0.398261 |
Target: 5'- -cGaCGGCCUGUgGCAcUCGGGGCcgGUCa -3' miRNA: 3'- caC-GCCGGGCA-CGUuAGUCCCG--UAGc -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 36787 | 0.7 | 0.398261 |
Target: 5'- -gGCGGCCCGaGCcg-CAGGGCuggugCGu -3' miRNA: 3'- caCGCCGGGCaCGuuaGUCCCGua---GC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 56161 | 0.71 | 0.32349 |
Target: 5'- -cGCGGUCgGUGCcucGUCGGGGCGguccCGg -3' miRNA: 3'- caCGCCGGgCACGu--UAGUCCCGUa---GC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 14720 | 0.72 | 0.303931 |
Target: 5'- -cGCGGCCCGUGCGcuggagccggcacugGUCgaAGcGGcCAUCGa -3' miRNA: 3'- caCGCCGGGCACGU---------------UAG--UC-CC-GUAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 1072 | 0.72 | 0.284596 |
Target: 5'- gGUGuuGCCCGcGCAGUCcugcgggcggaugcGGGGCAUCa -3' miRNA: 3'- -CACgcCGGGCaCGUUAG--------------UCCCGUAGc -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 21461 | 0.73 | 0.253277 |
Target: 5'- -gGCGGCCgGUGUucgaCAcGGGCGUCGa -3' miRNA: 3'- caCGCCGGgCACGuua-GU-CCCGUAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 22339 | 0.76 | 0.150507 |
Target: 5'- -gGCGGCUgGUGgAccggcgaguAUCAGGGCAUCGa -3' miRNA: 3'- caCGCCGGgCACgU---------UAGUCCCGUAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 25870 | 0.77 | 0.131519 |
Target: 5'- -aGCGGCCCGcGCAgGUCGGGGCGg-- -3' miRNA: 3'- caCGCCGGGCaCGU-UAGUCCCGUagc -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 66256 | 1.09 | 0.000663 |
Target: 5'- uGUGCGGCCCGUGCAAUCAGGGCAUCGg -3' miRNA: 3'- -CACGCCGGGCACGUUAGUCCCGUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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