miRNA display CGI


Results 41 - 51 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19276 3' -58.9 NC_004685.1 + 52704 0.69 0.403908
Target:  5'- gCGGCAGGUcugcccacccUCGCCGGccGGgcaGUCGGGu -3'
miRNA:   3'- aGCCGUUCG----------AGCGGCU--CCag-CAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 32510 0.7 0.396035
Target:  5'- gCGGCAAGCUCgGCCaGGGcgcgaaccuucccggCGUCGGc -3'
miRNA:   3'- aGCCGUUCGAG-CGGcUCCa--------------GCAGCCu -5'
19276 3' -58.9 NC_004685.1 + 35112 0.7 0.395166
Target:  5'- cUCGGC-AGCgUCgGCCGcGGUCaUCGGAu -3'
miRNA:   3'- -AGCCGuUCG-AG-CGGCuCCAGcAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 33081 0.7 0.386548
Target:  5'- gCGGCGAGCgcaccCGCC-AGGUCcUCGGc -3'
miRNA:   3'- aGCCGUUCGa----GCGGcUCCAGcAGCCu -5'
19276 3' -58.9 NC_004685.1 + 63091 0.71 0.307411
Target:  5'- gUCGuCAGGUUCGCUGGGGUCGcgcucgUCGGu -3'
miRNA:   3'- -AGCcGUUCGAGCGGCUCCAGC------AGCCu -5'
19276 3' -58.9 NC_004685.1 + 34671 0.72 0.300216
Target:  5'- cCGGCGAGUUCGgCGAGGaCGUgauuucgcUGGAg -3'
miRNA:   3'- aGCCGUUCGAGCgGCUCCaGCA--------GCCU- -5'
19276 3' -58.9 NC_004685.1 + 15080 0.72 0.286216
Target:  5'- cCGGgGAGCUgcucggUGCCGAGGUcCGcUCGGGu -3'
miRNA:   3'- aGCCgUUCGA------GCGGCUCCA-GC-AGCCU- -5'
19276 3' -58.9 NC_004685.1 + 68955 0.72 0.272737
Target:  5'- gUCGGCAccucGGCUCGCac-GG-CGUCGGGa -3'
miRNA:   3'- -AGCCGU----UCGAGCGgcuCCaGCAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 10228 0.74 0.229558
Target:  5'- cCGGUcuGGC-CGCCGGGGU-GUCGGAu -3'
miRNA:   3'- aGCCGu-UCGaGCGGCUCCAgCAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 43061 0.75 0.197276
Target:  5'- gCGGCGGuGCUCGCCGcGGUCGgcuGGGc -3'
miRNA:   3'- aGCCGUU-CGAGCGGCuCCAGCag-CCU- -5'
19276 3' -58.9 NC_004685.1 + 65534 1.09 0.000669
Target:  5'- gUCGGCAAGCUCGCCGAGGUCGUCGGAg -3'
miRNA:   3'- -AGCCGUUCGAGCGGCUCCAGCAGCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.