miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19277 5' -54.2 NC_004685.1 + 30440 0.67 0.74548
Target:  5'- -cGAGGCGCUgggCAAGCccgucccccAGc-CGGCGCCg -3'
miRNA:   3'- ucUUCCGCGA---GUUCG---------UCaaGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 17781 0.67 0.74548
Target:  5'- uGGAGGGUgccGCUCAGGCca--CGGUGCUg -3'
miRNA:   3'- -UCUUCCG---CGAGUUCGucaaGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 56163 0.67 0.74548
Target:  5'- cGGucGGUGcCUCGucggGGCGGUccCGGCGCUg -3'
miRNA:   3'- -UCuuCCGC-GAGU----UCGUCAa-GCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 29269 0.67 0.735025
Target:  5'- cAGGAGGCGUUCuucGC----UGGCACCc -3'
miRNA:   3'- -UCUUCCGCGAGuu-CGucaaGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 62069 0.67 0.735025
Target:  5'- --cAGGUGCUCGAaccGCGGaUCGGCGa- -3'
miRNA:   3'- ucuUCCGCGAGUU---CGUCaAGCCGUgg -5'
19277 5' -54.2 NC_004685.1 + 16539 0.67 0.735025
Target:  5'- cGAAGGCGacc--GCGGUgauggCGGCGCUc -3'
miRNA:   3'- uCUUCCGCgaguuCGUCAa----GCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 19752 0.68 0.724467
Target:  5'- cGGAGGUGUUCAcccGCAGcgccuucaaCGGCAUCg -3'
miRNA:   3'- uCUUCCGCGAGUu--CGUCaa-------GCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 68556 0.68 0.724467
Target:  5'- cGAugcGGGCGCcccgaugcgUCGGGguGUUCGGaaACCg -3'
miRNA:   3'- uCU---UCCGCG---------AGUUCguCAAGCCg-UGG- -5'
19277 5' -54.2 NC_004685.1 + 30822 0.68 0.723406
Target:  5'- uGGAAGGUucagcagGCUCAguGGCAGgucgaGGaCGCCa -3'
miRNA:   3'- -UCUUCCG-------CGAGU--UCGUCaag--CC-GUGG- -5'
19277 5' -54.2 NC_004685.1 + 47237 0.68 0.713817
Target:  5'- uGGAgcAGGUGCagAAGCAGUgCGaCGCCu -3'
miRNA:   3'- -UCU--UCCGCGagUUCGUCAaGCcGUGG- -5'
19277 5' -54.2 NC_004685.1 + 53325 0.68 0.713817
Target:  5'- gAGGuccuGGGCGCUCAucgacuucgccuGGUugAGcgUGGCACCg -3'
miRNA:   3'- -UCU----UCCGCGAGU------------UCG--UCaaGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 63238 0.68 0.692288
Target:  5'- -aGGGGUGC-CGGGCuGUUCGG-GCCa -3'
miRNA:   3'- ucUUCCGCGaGUUCGuCAAGCCgUGG- -5'
19277 5' -54.2 NC_004685.1 + 31183 0.68 0.692288
Target:  5'- cGAAGGCGaucCGcGCGGUgccCGGCGCg -3'
miRNA:   3'- uCUUCCGCga-GUuCGUCAa--GCCGUGg -5'
19277 5' -54.2 NC_004685.1 + 7352 0.68 0.681431
Target:  5'- uGGAAGGCGa--AGGCgugGGUgaUCGGUGCCc -3'
miRNA:   3'- -UCUUCCGCgagUUCG---UCA--AGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 6693 0.68 0.681431
Target:  5'- -cAAGGaGCcCGAGguGggCGGCACCc -3'
miRNA:   3'- ucUUCCgCGaGUUCguCaaGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 39190 0.69 0.67162
Target:  5'- uGAAGGaccccggaaCGCUCcacgcgccgccuggcGGCGGcUUCGGCGCCg -3'
miRNA:   3'- uCUUCC---------GCGAGu--------------UCGUC-AAGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 7501 0.69 0.670527
Target:  5'- uGGAAGGCGCgggccgCAAGCcGUaccCGGCGa- -3'
miRNA:   3'- -UCUUCCGCGa-----GUUCGuCAa--GCCGUgg -5'
19277 5' -54.2 NC_004685.1 + 58108 0.69 0.669435
Target:  5'- uGAGGGCGUUCGauuucgcgcuucuGGUAGgcgCGGUugCc -3'
miRNA:   3'- uCUUCCGCGAGU-------------UCGUCaa-GCCGugG- -5'
19277 5' -54.2 NC_004685.1 + 31232 0.69 0.648623
Target:  5'- -aAGGGCgucgGCUCGGGCcuggUCGGCAUCg -3'
miRNA:   3'- ucUUCCG----CGAGUUCGuca-AGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 33837 0.69 0.648623
Target:  5'- -cGAGGUGUucaccgUCAAGgAGaaCGGCACCg -3'
miRNA:   3'- ucUUCCGCG------AGUUCgUCaaGCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.